| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116493787
Identifier: 116493787
GI number: 116493787
Start: 210390
End: 211211
Strand: Direct
Name: 116493787
Synonym: LSEI_0216
Alternate gene names: NA
Gene position: 210390-211211 (Clockwise)
Preceding gene: 116493786
Following gene: 116493788
Centisome position: 7.27
GC content: 47.81
Gene sequence:
>822_bases ATGGCAGAGAAACATGAAGCAGAGACGAAACAGACGGCAACCGATGCTGCAGTAAATGGTAAAAATACTGCTACGACTGA ACAAACAGCATCAAAAGTACAGTCGACAGCCACTGATGAGTCGTCAGCAGATCAAGCAACGGCGGCTAAAAATGCACATG TGAAACAGGAAAAGCCTGCGACCACTGTGCCAGAGCTGATTGCACGGCTCACTAATAAAAATGATGAATATATTTTCAAA CTACGCCGTGAGTTAAAAGACGGCGGTATGAACGCGGCGGACGAAGAAGAACTACTCAAAACGATGTTGCCCGAGATCAT CACAGCACAACGACAAGGCAAGCCAGCCAATCAGCTTTACGGACCGGTCACGGTAAAGGCAGACGAAATTCTGCATACGC CAAAACCTGAGCCTAAAAAGCCAATGTGGTTGATGGTCATTGACCAAAGTCTGTTCTTCATGTCGATTTTAGCGGTTATG TATGGGGCACTTGCCTACTTCGATACCAAGTCGCAAAACGCCGCCAGCAGCAGTTTTGTTTACTTAGTGATGTTGAGTCT AATGGCTGGTCTCTTCTTCGTTTATTATGCTGACTGGATGCAGCAAGATAAAAAGAAGCGCCGCAGTGCTTGGCTTGTCT TGGGCGGCGGTGTTGTCTTAGTCGTGTCGATCACGTTCATTGGCAGTGCCTTGGCGATGCTTGACACGCCGTTCACGCGC CCAATGCCGTGGTTCGTCAATATCATTATTGGCGCCATTGCCTATGGGATTCACTGGGTCTTACAGCACCGGTATCACCT CAAAAGCTTTTTCCAGAGATAA
Upstream 100 bases:
>100_bases TATCGATCCGAAGGCAAAGAATATGAAGTGCAGGATGGGGACATCATTGAATTCCGGTTCAATGTCTAACGCATAACGAC TTAGGAGATAGGAGTTTCCA
Downstream 100 bases:
>100_bases GCTGATAGTCAGATTTCAACATCGGGTATCTACTTTTTAAAAAATCCAACAGTCGCCGAAAATGGCGGCTTTTTTTGTAT TGCCAGTGAGGGAAAACGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MAEKHEAETKQTATDAAVNGKNTATTEQTASKVQSTATDESSADQATAAKNAHVKQEKPATTVPELIARLTNKNDEYIFK LRRELKDGGMNAADEEELLKTMLPEIITAQRQGKPANQLYGPVTVKADEILHTPKPEPKKPMWLMVIDQSLFFMSILAVM YGALAYFDTKSQNAASSSFVYLVMLSLMAGLFFVYYADWMQQDKKKRRSAWLVLGGGVVLVVSITFIGSALAMLDTPFTR PMPWFVNIIIGAIAYGIHWVLQHRYHLKSFFQR
Sequences:
>Translated_273_residues MAEKHEAETKQTATDAAVNGKNTATTEQTASKVQSTATDESSADQATAAKNAHVKQEKPATTVPELIARLTNKNDEYIFK LRRELKDGGMNAADEEELLKTMLPEIITAQRQGKPANQLYGPVTVKADEILHTPKPEPKKPMWLMVIDQSLFFMSILAVM YGALAYFDTKSQNAASSSFVYLVMLSLMAGLFFVYYADWMQQDKKKRRSAWLVLGGGVVLVVSITFIGSALAMLDTPFTR PMPWFVNIIIGAIAYGIHWVLQHRYHLKSFFQR >Mature_272_residues AEKHEAETKQTATDAAVNGKNTATTEQTASKVQSTATDESSADQATAAKNAHVKQEKPATTVPELIARLTNKNDEYIFKL RRELKDGGMNAADEEELLKTMLPEIITAQRQGKPANQLYGPVTVKADEILHTPKPEPKKPMWLMVIDQSLFFMSILAVMY GALAYFDTKSQNAASSSFVYLVMLSLMAGLFFVYYADWMQQDKKKRRSAWLVLGGGVVLVVSITFIGSALAMLDTPFTRP MPWFVNIIIGAIAYGIHWVLQHRYHLKSFFQR
Specific function: Unknown
COG id: COG4858
COG function: function code S; Uncharacterized membrane-bound protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30513; Mature: 30381
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKHEAETKQTATDAAVNGKNTATTEQTASKVQSTATDESSADQATAAKNAHVKQEKPA CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC TTVPELIARLTNKNDEYIFKLRRELKDGGMNAADEEELLKTMLPEIITAQRQGKPANQLY CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCC GPVTVKADEILHTPKPEPKKPMWLMVIDQSLFFMSILAVMYGALAYFDTKSQNAASSSFV CCEEEEHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH YLVMLSLMAGLFFVYYADWMQQDKKKRRSAWLVLGGGVVLVVSITFIGSALAMLDTPFTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC PMPWFVNIIIGAIAYGIHWVLQHRYHLKSFFQR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AEKHEAETKQTATDAAVNGKNTATTEQTASKVQSTATDESSADQATAAKNAHVKQEKPA CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC TTVPELIARLTNKNDEYIFKLRRELKDGGMNAADEEELLKTMLPEIITAQRQGKPANQLY CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCC GPVTVKADEILHTPKPEPKKPMWLMVIDQSLFFMSILAVMYGALAYFDTKSQNAASSSFV CCEEEEHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH YLVMLSLMAGLFFVYYADWMQQDKKKRRSAWLVLGGGVVLVVSITFIGSALAMLDTPFTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC PMPWFVNIIIGAIAYGIHWVLQHRYHLKSFFQR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA