Definition Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence.
Accession NC_008378
Length 870,021

Click here to switch to the map view.

The map label for this gene is 116248837

Identifier: 116248837

GI number: 116248837

Start: 166225

End: 167235

Strand: Reverse

Name: 116248837

Synonym: pRL120166

Alternate gene names: NA

Gene position: 167235-166225 (Counterclockwise)

Preceding gene: 116248838

Following gene: 116248836

Centisome position: 19.22

GC content: 61.42

Gene sequence:

>1011_bases
ATGGTTCGACCGGTCCGTGCGATCGTCATTGCAGTGCTTGTGTTGCTTGTCGCCTTCGCATCGGCCTGGTCGTCGCTCGC
GCTTTGGTACCGCTTGCCATTGCCCGAGGTCGGCAGGCAAGCCAGCGCCATCTTGTTCGGGCTTCTTGGCGCCTGGGTCA
TCGTGGCGCTCTTCGGCAGGAGGCGCTTTCGTGCGGTCCTCGCGTTTGCGGCCGCGTTCGTCCTTGTTCTCGTCTGGTGG
AGCACGATCGAGCCGCCGGCAAATGGAGCGTGGGCTCCGGACGTTGCTCGTCAGGTCACCGGCGAATTCGACGGTGATCT
GTTGACGCTGACAAATGTCCGCGATTTCGAGTGGCGCAGTGCCACCGACTTCACGGAACGATGGACGACACGCAGTTACG
ACCTGAACAAGCTGAAGAGCGTCGACATGTTCATGTCGTACTGGTCAGGTCCGACCATCGCGCATGTCATCATGAGCTTC
GGCTTCGACGACGGCCGCTATCTGGCGTGGTCTATCGAGGTGCGTCGCCTTTCCGGAGGTTCGTTCTCACCGCTGGCGGA
TCTTTTCAAAAACAGTCCTCTGGTCATCCTCGCCGCAGATGAAAGAGATGTGATCGGTCTCCGCTCCAATTTTCGCGGTG
AGGACGTCCAGATCTATCGCCTGAGGGCGACGCCGGCGGCTGCGAGACTTCTTCTGCGCGAGTATGTCTCCGACGCAAAC
AAGCTCGCGGCCACGCCCGCCTTCTACAATTCGCTGACGACCAACTGCACGACGACGATCGTCAAGATGATGCGCGTCGC
AGGCGACGCCGTGCCGACGGACTGGCGCCTCGTCGTCAACGGATACCTGCCGGAATACGCCTATGACCGTGGCGCGCTGG
ACATCTCCGTTCCCTTGTCGCAACTGCGGTCTGCCGCACACATCGCTGCAAGAGCGCACGACGACGGTGTTTCGCCGAAT
TTCTCGCAGGCCATTCGCGTCGGCGTCCCGTCGCCGTTGGGCGCGTTGTGA

Upstream 100 bases:

>100_bases
TCCGGAGACCCGTCGCTTCGGATAGATTCTGGGCTTCCAGTCCGGAAACCGATAGGGTCCACGACAGGACGGACGCTTCA
AACTCGTTTGGAAATGCAAA

Downstream 100 bases:

>100_bases
CGTATGCCGAAGCATTGAGCAAGCAAAACGGCTAGGCAGGCGCCACAATGCCTCCGGAGATTTTGACTACCATACGCCCC
GCTTCGGGGCTTTTCGTATT

Product: putative transmembrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW
STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF
GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN
KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN
FSQAIRVGVPSPLGAL

Sequences:

>Translated_336_residues
MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW
STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF
GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN
KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN
FSQAIRVGVPSPLGAL
>Mature_336_residues
MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW
STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF
GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN
KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN
FSQAIRVGVPSPLGAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37145; Mature: 37145

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRFRAVLAFAAAFVLVLVWWSTIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC
ATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSFGFDDGRYLAWSIEVRRLSGG
CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCC
SFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN
CCCHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCEEEECCHH
QLRSAAHIAARAHDDGVSPNFSQAIRVGVPSPLGAL
HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCC
>Mature Secondary Structure
MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRFRAVLAFAAAFVLVLVWWSTIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC
ATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSFGFDDGRYLAWSIEVRRLSGG
CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCC
SFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN
CCCHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCEEEECCHH
QLRSAAHIAARAHDDGVSPNFSQAIRVGVPSPLGAL
HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA