| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352392
Identifier: 115352392
GI number: 115352392
Start: 2577496
End: 2578665
Strand: Direct
Name: 115352392
Synonym: Bamb_2341
Alternate gene names: NA
Gene position: 2577496-2578665 (Clockwise)
Preceding gene: 115352391
Following gene: 115352393
Centisome position: 72.47
GC content: 74.87
Gene sequence:
>1170_bases ATGAACGCGCCCACCACCCATCAAGCAGGACTCCGAATGATCATGATCGCGGCAGGCGTTGCGGCGCTGATGTCGCTGGC CGCGTGCGGCGGCTCCGGCTCGCTGAGCAAGGGCACCGGCGGCTCCGGGTCGGGGTCCGGCGACACGACGGCGTCGACCG GCGGCACCGGCAACGGTACGAGCGGCACGTCGGCATCGACCGGCGGTACCGGCAGCACCGGCAGCACCGGCAACGGCGCG AGCGGCTCGTCGGCCAACGGCGTCGGCCAGACGCTCGCGGCGTCGAGCAACATCGTGACGGCCGGCGGCGGCGCCATCTC GGGCGTCGGCACGGCGATCGGGGCCCAAACGCTGCCGGGCACGAACCCCGCGACCACGCAGGGGCTCGGCGCGGTCGTGC AGGATGTCGGCGCGGCCGTCACGACGCTCGGCACCGGCCTCGGCTCGGGCCTCGGCCAGCTCGGCGCGTCGTCGAATCCG GTCGGCACGACGGTCGCGAGCACGGGCGGCGTGGTCACGGATCTCGGCCAGGCCGTCGCCGCGACGGGCGGGGTCGTGTC GAGCCTGGGGGCCAGCGGTTCCGCACTGGCGCCGCTTGCGCCCGTCACGTCGCCCGTCGGCGGTGCGGTGACGATGCTCG GCAACACGATCGCGGGCGGCGGCGCGACGCTCGGCACGCAGCTGTCGACCGGCCCGGTCGCGCAAGTGACGGGCGCGGCC AGCTCGGCGATCACGCCGATCACGACGACGGTCGGCTCGCTCACGCAGACGGCCGCCGCCAGCACGCCGCTCGGCGCGCC GCTGACGAACCTCGTCACGACCGTCGGCAACGGTGTCGCGAACGCCGGCACGACGATCGCGAAGACGGGCAACAATCCGG TCACGACCGGCGTCGGCAACGTCGTGACCGCGACCGGCAACACGGTCGCCACCGCAGGCACCGCGCTGCTGGGCGGCGGC GCGGCCGCGACGAATCCGCTCGCCCCGGTGACGGGGCTCCTGTCGACCGGCGCACTCGGTGGCACGACGGGCGGCAGCAA ACCGGCCGGCACGCTCACGTCGGCGGTCGGCGGCCTGACGGGCGGCAGCGGCACCGGCGTGCTGTCGAATACCGGCGGCG GCCTGCTCGCCCCGGTCACGACGACGCTGGGCACGCTGGTCAAAAAGTAA
Upstream 100 bases:
>100_bases AGACAACAACGACGCGCGCGCCGCTTCACTTCCGCAGCGACCGCACGCCGGCGCACACGAAGGCCGCCTGATCCATTTCC ATAATCGAGACGAGGAAGAC
Downstream 100 bases:
>100_bases CGTCACGCCGGCAGCCCCTGCGGCGCCCGTACCGTCGTCGACGGTCGGGCGCCGCGTGCGTTATGGCCCCTTATGCGTCC GATGCCGCCCGCCCGGCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MNAPTTHQAGLRMIMIAAGVAALMSLAACGGSGSLSKGTGGSGSGSGDTTASTGGTGNGTSGTSASTGGTGSTGSTGNGA SGSSANGVGQTLAASSNIVTAGGGAISGVGTAIGAQTLPGTNPATTQGLGAVVQDVGAAVTTLGTGLGSGLGQLGASSNP VGTTVASTGGVVTDLGQAVAATGGVVSSLGASGSALAPLAPVTSPVGGAVTMLGNTIAGGGATLGTQLSTGPVAQVTGAA SSAITPITTTVGSLTQTAAASTPLGAPLTNLVTTVGNGVANAGTTIAKTGNNPVTTGVGNVVTATGNTVATAGTALLGGG AAATNPLAPVTGLLSTGALGGTTGGSKPAGTLTSAVGGLTGGSGTGVLSNTGGGLLAPVTTTLGTLVKK
Sequences:
>Translated_389_residues MNAPTTHQAGLRMIMIAAGVAALMSLAACGGSGSLSKGTGGSGSGSGDTTASTGGTGNGTSGTSASTGGTGSTGSTGNGA SGSSANGVGQTLAASSNIVTAGGGAISGVGTAIGAQTLPGTNPATTQGLGAVVQDVGAAVTTLGTGLGSGLGQLGASSNP VGTTVASTGGVVTDLGQAVAATGGVVSSLGASGSALAPLAPVTSPVGGAVTMLGNTIAGGGATLGTQLSTGPVAQVTGAA SSAITPITTTVGSLTQTAAASTPLGAPLTNLVTTVGNGVANAGTTIAKTGNNPVTTGVGNVVTATGNTVATAGTALLGGG AAATNPLAPVTGLLSTGALGGTTGGSKPAGTLTSAVGGLTGGSGTGVLSNTGGGLLAPVTTTLGTLVKK >Mature_389_residues MNAPTTHQAGLRMIMIAAGVAALMSLAACGGSGSLSKGTGGSGSGSGDTTASTGGTGNGTSGTSASTGGTGSTGSTGNGA SGSSANGVGQTLAASSNIVTAGGGAISGVGTAIGAQTLPGTNPATTQGLGAVVQDVGAAVTTLGTGLGSGLGQLGASSNP VGTTVASTGGVVTDLGQAVAATGGVVSSLGASGSALAPLAPVTSPVGGAVTMLGNTIAGGGATLGTQLSTGPVAQVTGAA SSAITPITTTVGSLTQTAAASTPLGAPLTNLVTTVGNGVANAGTTIAKTGNNPVTTGVGNVVTATGNTVATAGTALLGGG AAATNPLAPVTGLLSTGALGGTTGGSKPAGTLTSAVGGLTGGSGTGVLSNTGGGLLAPVTTTLGTLVKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34539; Mature: 34539
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPTTHQAGLRMIMIAAGVAALMSLAACGGSGSLSKGTGGSGSGSGDTTASTGGTGNGT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGTSASTGGTGSTGSTGNGASGSSANGVGQTLAASSNIVTAGGGAISGVGTAIGAQTLPG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHCCCCCCC TNPATTQGLGAVVQDVGAAVTTLGTGLGSGLGQLGASSNPVGTTVASTGGVVTDLGQAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHH ATGGVVSSLGASGSALAPLAPVTSPVGGAVTMLGNTIAGGGATLGTQLSTGPVAQVTGAA HHCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCC SSAITPITTTVGSLTQTAAASTPLGAPLTNLVTTVGNGVANAGTTIAKTGNNPVTTGVGN CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC VVTATGNTVATAGTALLGGGAAATNPLAPVTGLLSTGALGGTTGGSKPAGTLTSAVGGLT EEEECCCEEHHCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC GGSGTGVLSNTGGGLLAPVTTTLGTLVKK CCCCCCEEECCCCCEEHHHHHHHHHHHCC >Mature Secondary Structure MNAPTTHQAGLRMIMIAAGVAALMSLAACGGSGSLSKGTGGSGSGSGDTTASTGGTGNGT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGTSASTGGTGSTGSTGNGASGSSANGVGQTLAASSNIVTAGGGAISGVGTAIGAQTLPG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHCCCCCCC TNPATTQGLGAVVQDVGAAVTTLGTGLGSGLGQLGASSNPVGTTVASTGGVVTDLGQAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHH ATGGVVSSLGASGSALAPLAPVTSPVGGAVTMLGNTIAGGGATLGTQLSTGPVAQVTGAA HHCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCC SSAITPITTTVGSLTQTAAASTPLGAPLTNLVTTVGNGVANAGTTIAKTGNNPVTTGVGN CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC VVTATGNTVATAGTALLGGGAAATNPLAPVTGLLSTGALGGTTGGSKPAGTLTSAVGGLT EEEECCCEEHHCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC GGSGTGVLSNTGGGLLAPVTTTLGTLVKK CCCCCCEEECCCCCEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA