Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352393

Identifier: 115352393

GI number: 115352393

Start: 2578933

End: 2579898

Strand: Direct

Name: 115352393

Synonym: Bamb_2342

Alternate gene names: NA

Gene position: 2578933-2579898 (Clockwise)

Preceding gene: 115352392

Following gene: 115352394

Centisome position: 72.51

GC content: 72.36

Gene sequence:

>966_bases
ATGAGCGGCGGACTCCCGTTTCCCGCATCCCGAATGTCGTTCCCGTCCTCGACGGTCTTCCTGGTGCTCGCCGCCGCGCT
GCTGTCCGGCTGCAGCTTGCTGCCGACCCAGAATCCGCCCGCGCCGATCAGCGAGGCGCTCATCGAGCCCGTCCGGGAAA
CCGCCGGCGAGCCGCTGACGATGCCGCCCGTGCCCGCGCCGACGCACCCGGAGGAACCGGAAGCGCCGAAAAAGCCGCAC
CGCGAGGTGCCGCGGCCGAAGCCGGTGCAACGTGCCGAACCGCCGGCCCCGCCGCCTCCGCCGCCGCCCCCGCTCGTCGC
GACCCGCCCGCTCGACCGCACCCAGATCCATGCGCTGCTCGACAGCGAAGTCGCGCGCCGCAACGGCAAGGTGATCGGCC
GCGCGGTCGACATGGTGATCGACACGAGCGGCAAGCCGCGCGAGATGATCGTCAACCTGCAGGGTTTCATGGGCATCGGC
GACCGCAAGGTCATCTTCCCGTGGAACGTGTTCCGCTTTACGCCGGGCGGCAAGCAGGAGCCGATCGTGCTCGACGTGCC
GTCGGGCGACCTGCCGCCTGCCGCGAGGCCCAAGGCCGTGCCGCTGTCGGGTTCGGCCGCGGCGTCGCCCGCCACGCGGC
TGCCGCTGCTCGACAGCGACGTCGAGCGCCCGAACGGCACGAAGATCGGCCGCGTCGTCGACGTGCTGATCGACCGCGCC
GCGCAGCCGCAGGCCGTCGTGCTCGACCTCGGCGGCCTCGTCAATACCGACCGCCGTTCGATCGCCGCGAGCTGGGGCGC
GCTGCGCTTCGTCACGCGTGACAAGGCGCTGCGCCCGCAGCTCGACCTCAACGACGCACAGATCAAGGCGGCGCCGCCCT
ACGCGGCCGACAAGCCGATCGTCGCGGTCTACCCGCCCGTTGCCCCGGCACCGGCGCAGGCTTCCTCTGCGAGTGCGACC
CGATGA

Upstream 100 bases:

>100_bases
ACGTTAAACTCTCACCTCGCGAGGTGCGCCGCCCGCACCCGCCATCCATCGCCAGCCGCGCGCCTGCAGGCCCGGCCCCC
GACCCATGGAGTGAGTGTCA

Downstream 100 bases:

>100_bases
CGATCAAGCATTCCGTCACCGTACGTAGTCTGCGGTCCCTCGACTGGCTCAACTTTTTCGTTGCAAACGTTCAAACCGGG
TTCGGTCCGTTCATCGCGTC

Product: PRC-barrel domain-containing protein

Products: NA

Alternate protein names: PRC-Barrel Domain-Containing Protein

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPH
REVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIG
DRKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA
AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASAT
R

Sequences:

>Translated_321_residues
MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPH
REVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIG
DRKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA
AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASAT
R
>Mature_320_residues
SGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPHR
EVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGD
RKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRAA
QPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASATR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33932; Mature: 33800

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLT
CCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
MPPVPAPTHPEEPEAPKKPHREVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALL
CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHH
DSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGDRKVIFPWNVFRFTPGGKQE
HHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEECCEEEEECCCCCCC
PIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPI
CCCCEEEEECCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCE
VAVYPPVAPAPAQASSASATR
EEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLT
CCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
MPPVPAPTHPEEPEAPKKPHREVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALL
CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHH
DSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGDRKVIFPWNVFRFTPGGKQE
HHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEECCEEEEECCCCCCC
PIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPI
CCCCEEEEECCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCE
VAVYPPVAPAPAQASSASATR
EEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA