Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352193

Identifier: 115352193

GI number: 115352193

Start: 2352399

End: 2352758

Strand: Direct

Name: 115352193

Synonym: Bamb_2142

Alternate gene names: NA

Gene position: 2352399-2352758 (Clockwise)

Preceding gene: 115352192

Following gene: 115352203

Centisome position: 66.14

GC content: 70.56

Gene sequence:

>360_bases
ATGAATCGCCCGTTCCGCATCCTCGTCCTGACCAGCGTCGCCGCCGGCACGCTGGCCCTCGCCGGCTGCGCGGTGCAGCC
GCCTTCGTCGACGATCCTCAGCCGCCTGCCCGAACCGGGCGCATCGGGCGGCCAGCCGCCCGCGCTGTCGAGTGCGGAAC
GCAAACGCTACGACGAAATCGACCGGCAGGTGCTGCGCGAGCAGAACGATGCCATGGCAGCCGAGGCAGCCGCGCGCGCG
TGGGCGTATTACTCGCCGCCGCCCGTGACGGTCTACGGCGGCTATTACGGCGGTTACGGCGGTTGGGGAAACCGCTGGGG
CACCGGCATCGGCTATGGCTATCCGGGCTGGTGGTGGTGA

Upstream 100 bases:

>100_bases
CATAATGAACGCATGAGCGTCGCATGCGCGGCTCGGTCGCCGCAGGCCCGGCCTTCGGTGCAAGCCGCTTTTCGCTGTCG
GCGCGCTGCTGGAGAGACAC

Downstream 100 bases:

>100_bases
TGCGCGAACGCGCCGATCGACCCGATTGAAAACCGGCAGGAAATAAAAAAGCGCGGCATTTCCCGCGCTTTTTCAATGGT
TCGGACTGCCGTGCTCAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MNRPFRILVLTSVAAGTLALAGCAVQPPSSTILSRLPEPGASGGQPPALSSAERKRYDEIDRQVLREQNDAMAAEAAARA
WAYYSPPPVTVYGGYYGGYGGWGNRWGTGIGYGYPGWWW

Sequences:

>Translated_119_residues
MNRPFRILVLTSVAAGTLALAGCAVQPPSSTILSRLPEPGASGGQPPALSSAERKRYDEIDRQVLREQNDAMAAEAAARA
WAYYSPPPVTVYGGYYGGYGGWGNRWGTGIGYGYPGWWW
>Mature_119_residues
MNRPFRILVLTSVAAGTLALAGCAVQPPSSTILSRLPEPGASGGQPPALSSAERKRYDEIDRQVLREQNDAMAAEAAARA
WAYYSPPPVTVYGGYYGGYGGWGNRWGTGIGYGYPGWWW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12826; Mature: 12826

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRPFRILVLTSVAAGTLALAGCAVQPPSSTILSRLPEPGASGGQPPALSSAERKRYDEI
CCCCEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
DRQVLREQNDAMAAEAAARAWAYYSPPPVTVYGGYYGGYGGWGNRWGTGIGYGYPGWWW
HHHHHHHCCHHHHHHHHHHHHCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRPFRILVLTSVAAGTLALAGCAVQPPSSTILSRLPEPGASGGQPPALSSAERKRYDEI
CCCCEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
DRQVLREQNDAMAAEAAARAWAYYSPPPVTVYGGYYGGYGGWGNRWGTGIGYGYPGWWW
HHHHHHHCCHHHHHHHHHHHHCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA