Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351094

Identifier: 115351094

GI number: 115351094

Start: 1129437

End: 1129907

Strand: Direct

Name: 115351094

Synonym: Bamb_1040

Alternate gene names: NA

Gene position: 1129437-1129907 (Clockwise)

Preceding gene: 115351093

Following gene: 115351096

Centisome position: 31.76

GC content: 69.64

Gene sequence:

>471_bases
ATGATCGTCCGCTGGTTGCTGGCAGCCGTTCACCTGATGGCGTTTGGCGTCGCGTTCGCCGCGATCGCGGGGCGCAACCG
CGCGCTGCGCCGGGTCATCGCGTCCGCGCAGGCCGCCGACCTGCCCGGCGTGTTCAAGGCCGATGCGGCCTGGGGATTGT
CCGCGCTGGTGCTGATCGCGACGGGGCTCGCGCGCGCGTTCGGCGGCTTCGAGAAAGGCTCCGCGTATTACCTTCACGAG
CCGCTCTTTCACCTCAAGATGACCGCGCTCGTGCTGATCCTGCTGCTCGAGGTCGTGCCGATGCTCGGGCTGATCCGCTG
GCGCGTCGCCGCGCGGCGGCAGCAGATGCCGGATCTCGGCCGCGCACGGACCTATGTGCGGATCGGTCACTGGCAGGCCG
TGCTCGTGATGGTGATCGTGTTGGCCGCGTCGGGGATGGCGCGGGGGATCTGGGCAGCCGGGCAGCTTTGA

Upstream 100 bases:

>100_bases
GTGACCGAGGGCGACCGCGTCGCGGTGCTCGCGCTCGACGCGGCGCTCAAGCAGATCGTCTGACAAGGCCTGCGCGGCGC
GCGGGCGACAAGGAGGCGCA

Downstream 100 bases:

>100_bases
CCGGCGGATGGCGCCGGTTGCCGTTGCCGGGCCTGATCATTCTGGACCGACCGACGGGCCGAGCGACCGACAGACCGACC
GGCGGGCCGTGGCCGCCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE
PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL

Sequences:

>Translated_156_residues
MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE
PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL
>Mature_156_residues
MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE
PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL

Specific function: Unknown

COG id: COG3556

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16927; Mature: 16927

Theoretical pI: Translated: 12.13; Mature: 12.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIA
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGLARAFGGFEKGSAYYLHEPLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLG
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIA
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGLARAFGGFEKGSAYYLHEPLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLG
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA