| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is hitA [H]
Identifier: 115350408
GI number: 115350408
Start: 394746
End: 395111
Strand: Direct
Name: hitA [H]
Synonym: Bamb_0353
Alternate gene names: 115350408
Gene position: 394746-395111 (Clockwise)
Preceding gene: 115350407
Following gene: 115350409
Centisome position: 11.1
GC content: 68.85
Gene sequence:
>366_bases ATGAGTCACGATCCGAATTGCCTGTTCTGCAAGATCGCGGCGGGCGAGATCCCGAGCGAGAAGGTGCACGAGGACGACGA ATTCGTCGCGTTTCGCGACATCCGCCCGGCGGCCGAGACGCACGTGCTGGTGATTCCGCGCCGGCACCTGCCGACGCTGT CGGCGGCGAGCGAAGCCGATGCGCCGATGCTCGGCCGGCTGATGCTGCTCGTCGCGCGTCTGGCCGACCAGCTCGGGGTG GCCTACACGGGCGGCGAAACCGGTTTTCGCACGGTGATCAACACGGGCCCCGGCGGCGGGCAGGAGGTCTACCACCTGCA CGCGCATATCCTGGCCGGTCCGCGCCCGTGGCTGCGGATGGGTTGA
Upstream 100 bases:
>100_bases GTACCGTATCATCAAGGGTTGGCTGTACCTGAACGACAACAAGACGCTCGATCCGCAGGCCTGGTTCTGACCCGCGCGCG GGGCGTTTCGCAGGAGCAAC
Downstream 100 bases:
>100_bases CGTAGCGGGGCGTTTCCCCGCATCGATAGTCGAAGCCGGCGTGCCGCCGGCGATTTGCGCCGCCACGCGGCATGGTTGAG GAGAGGTTTCATCATGGGTG
Product: histidine triad (HIT) protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGV AYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG
Sequences:
>Translated_121_residues MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGV AYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG >Mature_120_residues SHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGVA YTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG
Specific function: Unknown
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HIT domain [H]
Homologues:
Organism=Homo sapiens, GI4885413, Length=108, Percent_Identity=43.5185185185185, Blast_Score=97, Evalue=2e-21, Organism=Homo sapiens, GI14211923, Length=107, Percent_Identity=39.2523364485981, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1787346, Length=111, Percent_Identity=45.945945945946, Blast_Score=87, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17506713, Length=108, Percent_Identity=44.4444444444444, Blast_Score=102, Evalue=4e-23, Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=49.0740740740741, Blast_Score=102, Evalue=5e-23, Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=49.0740740740741, Blast_Score=102, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011146 - InterPro: IPR011151 - InterPro: IPR019808 - InterPro: IPR001310 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13132; Mature: 13001
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEAD CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC APMLGRLMLLVARLADQLGVAYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRM CCHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCC G C >Mature Secondary Structure SHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEAD CCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC APMLGRLMLLVARLADQLGVAYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRM CCHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA