| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969861
Identifier: 113969861
GI number: 113969861
Start: 1787129
End: 1787728
Strand: Direct
Name: 113969861
Synonym: Shewmr4_1519
Alternate gene names: NA
Gene position: 1787129-1787728 (Clockwise)
Preceding gene: 113969860
Following gene: 113969864
Centisome position: 37.97
GC content: 49.0
Gene sequence:
>600_bases ATGCCATTACCGTTACTTTGGCTTGGCAGTGCAGCAATGGGCGCGTTATTGCTCGCCGATGAGCGTGAAAAGCGTCAACA GCTTGAGCGTGACCGCCTATTAGGCAGAGCGCCACGGCAAGCGAGTGCCAACCAAGCCATGGTTGCAGCACCCAGCCAGT GGCAGAAGGGCTTTAAACAAGTCTCGCCGCAGCCTGGAAGCATTGTTTGCTGCTATGTGTTTGGGGTCATTGAACATACT GGCATTTGGTTGGCGGATGATTGCCTTATCGAGCTACATGGCTCAGGGCTGATAAGGGCGGTATCGGTAAAACGGTTTCT AGCGGGGCGTACTGGTAGCCAAATCTATATTGCCTGCAATCATCAACATCAACCACTGATTGCCAGTGATATGGTGAGCC GTGCCGAGCGGGCCATTTATCAATACCGTGAATATGATTTGTTCGACAACAACTGCCATCGATTCGTCTGGTCATGTTTG TGTGGTGAAGAGGTTGCCATAAAAAGCTTTAATGAATTAAATCAAAAACTCGCGGGCTATTTTAAGCAGGGGATTTACTG GGATGAAATGCGTCGAGTCCCTGAAGAGATAAAAATGTAA
Upstream 100 bases:
>100_bases TTCAAAGGGTAAGATTCACTGGTTTTAAAGGTGCCGTCTTTGAGGTAAACGGTCTAAAGACGAGTTTTATTAAAGGTGAT TGTTGCCATAAGGGGATGAT
Downstream 100 bases:
>100_bases AAGGCCATCCGAAGATGGCCTTTGAGCCCTGTTAGCGGGATAAATTACTTACAGAAATAATCCACAGCACGTTTAACCAG CTCAATACCACTTAGCTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MPLPLLWLGSAAMGALLLADEREKRQQLERDRLLGRAPRQASANQAMVAAPSQWQKGFKQVSPQPGSIVCCYVFGVIEHT GIWLADDCLIELHGSGLIRAVSVKRFLAGRTGSQIYIACNHQHQPLIASDMVSRAERAIYQYREYDLFDNNCHRFVWSCL CGEEVAIKSFNELNQKLAGYFKQGIYWDEMRRVPEEIKM
Sequences:
>Translated_199_residues MPLPLLWLGSAAMGALLLADEREKRQQLERDRLLGRAPRQASANQAMVAAPSQWQKGFKQVSPQPGSIVCCYVFGVIEHT GIWLADDCLIELHGSGLIRAVSVKRFLAGRTGSQIYIACNHQHQPLIASDMVSRAERAIYQYREYDLFDNNCHRFVWSCL CGEEVAIKSFNELNQKLAGYFKQGIYWDEMRRVPEEIKM >Mature_198_residues PLPLLWLGSAAMGALLLADEREKRQQLERDRLLGRAPRQASANQAMVAAPSQWQKGFKQVSPQPGSIVCCYVFGVIEHTG IWLADDCLIELHGSGLIRAVSVKRFLAGRTGSQIYIACNHQHQPLIASDMVSRAERAIYQYREYDLFDNNCHRFVWSCLC GEEVAIKSFNELNQKLAGYFKQGIYWDEMRRVPEEIKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22647; Mature: 22516
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPLLWLGSAAMGALLLADEREKRQQLERDRLLGRAPRQASANQAMVAAPSQWQKGFKQ CCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH VSPQPGSIVCCYVFGVIEHTGIWLADDCLIELHGSGLIRAVSVKRFLAGRTGSQIYIACN CCCCCCCEEHHHHHHHHHHCCCEEECCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC HQHQPLIASDMVSRAERAIYQYREYDLFDNNCHRFVWSCLCGEEVAIKSFNELNQKLAGY CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FKQGIYWDEMRRVPEEIKM HHHCCCHHHHHCCHHHHCC >Mature Secondary Structure PLPLLWLGSAAMGALLLADEREKRQQLERDRLLGRAPRQASANQAMVAAPSQWQKGFKQ CCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH VSPQPGSIVCCYVFGVIEHTGIWLADDCLIELHGSGLIRAVSVKRFLAGRTGSQIYIACN CCCCCCCEEHHHHHHHHHHCCCEEECCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC HQHQPLIASDMVSRAERAIYQYREYDLFDNNCHRFVWSCLCGEEVAIKSFNELNQKLAGY CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FKQGIYWDEMRRVPEEIKM HHHCCCHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA