Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475188

Identifier: 113475188

GI number: 113475188

Start: 2260811

End: 2262151

Strand: Reverse

Name: 113475188

Synonym: Tery_1488

Alternate gene names: NA

Gene position: 2262151-2260811 (Counterclockwise)

Preceding gene: 113475195

Following gene: 113475187

Centisome position: 29.19

GC content: 31.25

Gene sequence:

>1341_bases
TTGGATAAAAAAAAATATCAAAAAAATCAGAAAAATTTGCCAGAATTACCTGTTAAACTAGGGGATAAAAAGGCTCTATT
GACACAATATTCTTCTCAAATAAATAAACATAAACAAGTATTAGAAGAATATTCTAATAAACTTGGTAAGTGGGTAGAAG
AATTTAAAAAAAATCAGGAACCGAGAGTAGCACAATCACCTATTGTTCCTACCACTCAAGAAATTATACCGAAAAAGCTT
AAAAGTAAAAATATGACAAGATGTTCTCAAACAGTTGAAAATTCCATTGTAGAAATAATAGATATTATTTTAGAACCTGT
GGACGCTTACCTGTGGGGATTCAATATAGATTTACCGCAAAAAGGAGATAAATTTAATAGTTATGTCATAGAAATAATTG
GTTGGGTTTTAGGGAAAAAATCTCCAGCTATGAAAATAGAAATAGTTAAAGACGAGCGGGTAATTAATCAGGCTTTGATT
AGAAAACAGCGACTAGGTGTAGCTAAACATTATCAAAAATTACCAAAAGCTAAAAAATGTGGTTTTGTAGCCGAATTAGG
AATAGCTGGAATGCCACAAAAAACCACAGCAGATTTGACGATTAGAGCTGTTCTTAAAGATAAAACTATTGTTCCTCTGG
CTTCAGTGAAATTGCAATTTCATCCCCCCCAAGCTCTAGGGGTAGTTTACATAGCAATGGGTAAGAAATATATTGAGGAA
GCAAAGATTTCTGCAGCAAGTTTAAAAGCTAAAATGCCGAATATTCCAGTCACAATTTTTGCTAATCAAGAAGTTAATGA
GCAAGAATTTGATAAATCTGTGGTAGTAAAGAAGTCATATTATAGCTTTGAAGATAAAGTAGTTTATATGTATGATTCTC
CTTATGAATACACTTTATTTCTGGATACTGATACTTATATATGTGAAGATTTTTCCGAGTTATTTGCTATCTTAGATAAT
TTTGATATTGCAGCAGTTCATGCTCCAACAAAAATACCGGGTATTGTTAATGGAGTGCCAGAATGTTATCAACAAATGAA
TACAGGAGTCATTTTATTTAAGAAGTCTCCAGAAGTGAAAAAGTTTTTTGAATATTGGGTAAAATTATATAAGTCAGGAG
AACCAGATCAACCTAGTTTTAGAGAAGCATTATTTAATAGTCAATTGAGAATAGCTACTTTAACAGCAGAATATAATTGT
CGATTTCCTTTCCCATTTTTTGTATGTGGAACTGTAAAAATACTTCACGGGAGACATCCTAATCTGGATGATGTTGCGCA
AAAAATTAATTCTGAAAAAGGTCTAAGAGTATATAAAGCTAATTATTTTAAATTCGAGTAA

Upstream 100 bases:

>100_bases
ATGAAGCTATTAAATTAAACTAATGTTTGCTTGATTAAAAAGCTGAAAGTTTACTACTAATAGCCGAATACTTACATAAA
AAAATCGGGCATCATAAAAA

Downstream 100 bases:

>100_bases
ATTTAGGAATTAGCTGTTAGGTATCAGCCATTTTTTAGTTTTAGATCATAGCTTTATTCATTAATCATAATTAAATCTGG
CTACAAAAGCAGACTAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL
KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI
RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE
AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN
FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC
RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE

Sequences:

>Translated_446_residues
MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL
KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI
RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE
AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN
FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC
RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE
>Mature_446_residues
MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL
KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI
RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE
AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN
FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC
RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51080; Mature: 51080

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQE
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PRVAQSPIVPTTQEIIPKKLKSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQ
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
KGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALIRKQRLGVAKHYQKLPKAKKC
CCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHCCCHHHC
GFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE
CCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCHHHHEEEEHHHHHHHHH
AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLF
HHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCEEEEEE
LDTDTYICEDFSELFAILDNFDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVK
EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHCCCEEEEECCCCHH
KFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNCRFPFPFFVCGTVKILHGRHP
HHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCC
NLDDVAQKINSEKGLRVYKANYFKFE
CHHHHHHHHCCCCCCEEEEECCEECC
>Mature Secondary Structure
MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQE
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PRVAQSPIVPTTQEIIPKKLKSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQ
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
KGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALIRKQRLGVAKHYQKLPKAKKC
CCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHCCCHHHC
GFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE
CCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCHHHHEEEEHHHHHHHHH
AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLF
HHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCEEEEEE
LDTDTYICEDFSELFAILDNFDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVK
EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHCCCEEEEECCCCHH
KFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNCRFPFPFFVCGTVKILHGRHP
HHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCC
NLDDVAQKINSEKGLRVYKANYFKFE
CHHHHHHHHCCCCCCEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA