| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is cysZ [H]
Identifier: 113474703
GI number: 113474703
Start: 1410906
End: 1411763
Strand: Direct
Name: cysZ [H]
Synonym: Tery_0890
Alternate gene names: 113474703
Gene position: 1410906-1411763 (Clockwise)
Preceding gene: 113474702
Following gene: 113474704
Centisome position: 18.2
GC content: 30.89
Gene sequence:
>858_bases ATGATAAAACAAGGTAGTTTCAAATCAATACTATCTATCTTTAAAGCTCCTGCCGGATTAATAGCTGGTTCAACCTATCA TTTTCGTGCTTTAATAATATTTGTAAAAAATCCTAGATTAATCAATTACATAATTGCTCCGATTTTTATTAATATTGTTG TCGGTATTTTTCTGTATATTAGTCTGCTATTACCTGGAATAAGTTTAATTAATACTATCTTTAATAATTTATCTTTGCAG TTTGATAGCCTGATTTATCAATTACCAACTTGGTTAAAATTCTTGAGTTATTTGGATAATGCTTTAGGTTTGCTCTTTAA GCTCATTCTATTTACAATATTTTTGCTAATTATTGGATTTTTGTTAGTACAATTTGGAGTTATTCTTGGTTCTCCTTTTT ATGGTCAACTTTCTGAACAATTAGAAAAAACTCGAACTGGTACATTACCTGAAGCTTCTTCTGGTTTACTATCTATTATT AGGGATATTTACCGAGCTATACTTTTTGAGCTCAAAAAAGTGGCATTATTATTAGCAATAGGCTTGCCGATGTTGTTGCT CAATTTTTTTCCTGGAGGCTCTTTAATAGCAACTATTGGCGGCATCGCTTTAACAACTTCTATTGTTTGTCTTGACTTTT TTGATGGACCTTTGGAGAGAAGAAAATTAAAATTTCGAGAGAAGTTAAAAGTTGTATATCGTAGCTTACCAGCAAGTGCC ACTTTTGGGTTAATTTGTCAAGTTTTAATTACTATTCCTATAGTTAATTTTTTGGCTATTCCTATATGTGTAGTGGCAGG GACTTTATTTTGTTGCGATCGCGTACTACCAAAGTTATTACCAAATAACCAAACTTAA
Upstream 100 bases:
>100_bases TTTGTGAGTCTAATAAACTACATAGCCAGGCTTAATAATTAATAGTGTTAGGGTGTAACTTGAAAATTAAACTAAGTCAA AAAAACCTAATTTAAAATCA
Downstream 100 bases:
>100_bases AGAGGGTTTTTAGGTACTATACATTAAATATTAGGGCTTTGATGGCTGATTACAGTAGCAGCCTTTAGGAGAGAGCATGG GTAAGAAAAATGTCAACCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MIKQGSFKSILSIFKAPAGLIAGSTYHFRALIIFVKNPRLINYIIAPIFINIVVGIFLYISLLLPGISLINTIFNNLSLQ FDSLIYQLPTWLKFLSYLDNALGLLFKLILFTIFLLIIGFLLVQFGVILGSPFYGQLSEQLEKTRTGTLPEASSGLLSII RDIYRAILFELKKVALLLAIGLPMLLLNFFPGGSLIATIGGIALTTSIVCLDFFDGPLERRKLKFREKLKVVYRSLPASA TFGLICQVLITIPIVNFLAIPICVVAGTLFCCDRVLPKLLPNNQT
Sequences:
>Translated_285_residues MIKQGSFKSILSIFKAPAGLIAGSTYHFRALIIFVKNPRLINYIIAPIFINIVVGIFLYISLLLPGISLINTIFNNLSLQ FDSLIYQLPTWLKFLSYLDNALGLLFKLILFTIFLLIIGFLLVQFGVILGSPFYGQLSEQLEKTRTGTLPEASSGLLSII RDIYRAILFELKKVALLLAIGLPMLLLNFFPGGSLIATIGGIALTTSIVCLDFFDGPLERRKLKFREKLKVVYRSLPASA TFGLICQVLITIPIVNFLAIPICVVAGTLFCCDRVLPKLLPNNQT >Mature_285_residues MIKQGSFKSILSIFKAPAGLIAGSTYHFRALIIFVKNPRLINYIIAPIFINIVVGIFLYISLLLPGISLINTIFNNLSLQ FDSLIYQLPTWLKFLSYLDNALGLLFKLILFTIFLLIIGFLLVQFGVILGSPFYGQLSEQLEKTRTGTLPEASSGLLSII RDIYRAILFELKKVALLLAIGLPMLLLNFFPGGSLIATIGGIALTTSIVCLDFFDGPLERRKLKFREKLKVVYRSLPASA TFGLICQVLITIPIVNFLAIPICVVAGTLFCCDRVLPKLLPNNQT
Specific function: Possibly involved in sulfate transport [H]
COG id: COG2981
COG function: function code E; Uncharacterized protein involved in cysteine biosynthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CysZ family [H]
Homologues:
Organism=Escherichia coli, GI1788753, Length=251, Percent_Identity=25.8964143426295, Blast_Score=94, Evalue=9e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022985 - InterPro: IPR007496 [H]
Pfam domain/function: PF04401 DUF540 [H]
EC number: NA
Molecular weight: Translated: 31576; Mature: 31576
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKQGSFKSILSIFKAPAGLIAGSTYHFRALIIFVKNPRLINYIIAPIFINIVVGIFLYI CCCCCHHHHHHHHHHCCHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SLLLPGISLINTIFNNLSLQFDSLIYQLPTWLKFLSYLDNALGLLFKLILFTIFLLIIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVQFGVILGSPFYGQLSEQLEKTRTGTLPEASSGLLSIIRDIYRAILFELKKVALLLAI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLPMLLLNFFPGGSLIATIGGIALTTSIVCLDFFDGPLERRKLKFREKLKVVYRSLPASA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH TFGLICQVLITIPIVNFLAIPICVVAGTLFCCDRVLPKLLPNNQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIKQGSFKSILSIFKAPAGLIAGSTYHFRALIIFVKNPRLINYIIAPIFINIVVGIFLYI CCCCCHHHHHHHHHHCCHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SLLLPGISLINTIFNNLSLQFDSLIYQLPTWLKFLSYLDNALGLLFKLILFTIFLLIIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVQFGVILGSPFYGQLSEQLEKTRTGTLPEASSGLLSIIRDIYRAILFELKKVALLLAI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLPMLLLNFFPGGSLIATIGGIALTTSIVCLDFFDGPLERRKLKFREKLKVVYRSLPASA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH TFGLICQVLITIPIVNFLAIPICVVAGTLFCCDRVLPKLLPNNQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA