| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474112
Identifier: 113474112
GI number: 113474112
Start: 319663
End: 320403
Strand: Reverse
Name: 113474112
Synonym: Tery_0211
Alternate gene names: NA
Gene position: 320403-319663 (Counterclockwise)
Preceding gene: 113474116
Following gene: 113474111
Centisome position: 4.13
GC content: 34.01
Gene sequence:
>741_bases ATGACGCTACCACAAAGTTACAAATCTCAGTTGGAATATATTCAACCTTCTCCCAAGTTTAAAAAACTCATTGATGGCCA AGTTGAGGCTGAAAACTTTCCCGGCTATTCAGTTATTACTCCACCAGAGGATGAGGACTCACAAAACAGTAATTTTTATA AGTGTTTACAAGAGTGTCAAAAAGAATTAATAGAACTATTAGGCACAAGTTTAATGGTTCCAGTTCCTAGCAATAGTTTT CATTTTACCTTGGCGGATTTAATTTGGGAAAGTGCCTTTCTAAATGCTAGTCAGAATAATTCTAAATTTGAAGAAAAATT ACATTCTTGTATTGCAGAAAGTTTTCAGGGGTTATCTGTTTCAGATAATGGCCATAAAGTTAACTGGCAAATTTTCGGAA TTATAGTCATGACTAGATCAATTGGTGTTTGTTTAGTTCCAAAAGATGAAGTTTCTTATGAACAAGTTCTCAAATTACGT CGGTCAATTTATCAAAATCCTAATTTCATTGCTCTAGGCATTGAACAGCAATATCATTTGACTGCTCATGTTACCTTGGG ATATTTTGGGGAAATTCCATCAAATTTAGATATTCCTGGTCTGGGGGAAACTATTTCAAATTTAAATAATAAGTTCTTGG AGCCTACTCCAGAAATTTTGGTACATCGGGCAGAACTACGAAAGTTTGATAATATGACTAAATACTATCGAGAGTCTGAT TGGCCTGTTATAGATTTATGA
Upstream 100 bases:
>100_bases CTCGCCAAAGTAGAGGTAAATTGACATAAAAGCTATTTTTGACAAGGGGAAATTAAGATTGGACGATACATATCAGAATT ACATTAACCGAGTAGCTCAG
Downstream 100 bases:
>100_bases TCAAATCAGACCATAATTAACTAGGCATTAATTATGGTCTAATGCATGGCTATGATTTTTCTTTAATGGCAATAATGCTC TGTATCAATAATGCTTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MTLPQSYKSQLEYIQPSPKFKKLIDGQVEAENFPGYSVITPPEDEDSQNSNFYKCLQECQKELIELLGTSLMVPVPSNSF HFTLADLIWESAFLNASQNNSKFEEKLHSCIAESFQGLSVSDNGHKVNWQIFGIIVMTRSIGVCLVPKDEVSYEQVLKLR RSIYQNPNFIALGIEQQYHLTAHVTLGYFGEIPSNLDIPGLGETISNLNNKFLEPTPEILVHRAELRKFDNMTKYYRESD WPVIDL
Sequences:
>Translated_246_residues MTLPQSYKSQLEYIQPSPKFKKLIDGQVEAENFPGYSVITPPEDEDSQNSNFYKCLQECQKELIELLGTSLMVPVPSNSF HFTLADLIWESAFLNASQNNSKFEEKLHSCIAESFQGLSVSDNGHKVNWQIFGIIVMTRSIGVCLVPKDEVSYEQVLKLR RSIYQNPNFIALGIEQQYHLTAHVTLGYFGEIPSNLDIPGLGETISNLNNKFLEPTPEILVHRAELRKFDNMTKYYRESD WPVIDL >Mature_245_residues TLPQSYKSQLEYIQPSPKFKKLIDGQVEAENFPGYSVITPPEDEDSQNSNFYKCLQECQKELIELLGTSLMVPVPSNSFH FTLADLIWESAFLNASQNNSKFEEKLHSCIAESFQGLSVSDNGHKVNWQIFGIIVMTRSIGVCLVPKDEVSYEQVLKLRR SIYQNPNFIALGIEQQYHLTAHVTLGYFGEIPSNLDIPGLGETISNLNNKFLEPTPEILVHRAELRKFDNMTKYYRESDW PVIDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28099; Mature: 27968
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPQSYKSQLEYIQPSPKFKKLIDGQVEAENFPGYSVITPPEDEDSQNSNFYKCLQECQ CCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH KELIELLGTSLMVPVPSNSFHFTLADLIWESAFLNASQNNSKFEEKLHSCIAESFQGLSV HHHHHHHCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE SDNGHKVNWQIFGIIVMTRSIGVCLVPKDEVSYEQVLKLRRSIYQNPNFIALGIEQQYHL CCCCCEEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEE TAHVTLGYFGEIPSNLDIPGLGETISNLNNKFLEPTPEILVHRAELRKFDNMTKYYRESD EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC WPVIDL CCEECC >Mature Secondary Structure TLPQSYKSQLEYIQPSPKFKKLIDGQVEAENFPGYSVITPPEDEDSQNSNFYKCLQECQ CCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH KELIELLGTSLMVPVPSNSFHFTLADLIWESAFLNASQNNSKFEEKLHSCIAESFQGLSV HHHHHHHCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE SDNGHKVNWQIFGIIVMTRSIGVCLVPKDEVSYEQVLKLRRSIYQNPNFIALGIEQQYHL CCCCCEEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEE TAHVTLGYFGEIPSNLDIPGLGETISNLNNKFLEPTPEILVHRAELRKFDNMTKYYRESD EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC WPVIDL CCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA