Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474059

Identifier: 113474059

GI number: 113474059

Start: 222270

End: 224264

Strand: Direct

Name: 113474059

Synonym: Tery_0152

Alternate gene names: NA

Gene position: 222270-224264 (Clockwise)

Preceding gene: 113474058

Following gene: 113474060

Centisome position: 2.87

GC content: 31.18

Gene sequence:

>1995_bases
ATGGCATCTATAGATCAAATTATTCAAAGAGAACTTAATCCTTTCGATCCTGTAACTCTTTATACTATTAATTTTTGGCA
AGAGCAACAAAATTCTAACCTGAATGTTGATTCTATCCATCAAAATATTATCACTGATATAGAAACTGTACTAGAGCAAG
TGGCTCAGGAACATCACCCCCGTACTTTGATACTTACAGGTGACTCTGGTTCTGGCAAAAGTTACCTTTTGGGGAGAATT
AAAAAATTATTCAATACTAAAGCTTTTTTTGTCTATGTCGATCCTTGGCCTCATAGTGATTATATTTGGAGACATATTTT
ACGTCAAACTGTTGACTGCCTGATGAAAACTCCAGATGGTAAAACAGATTCTCAGCTATTACTATGCCTCAAAAGTCTAT
TAGCTTTCCCAAATAGTAATTTGGTCCAAAAAATTCTTGGTGAAAGAAGAGTATTCATTAGAAACCTTAAAGCAATTTAC
CCTTCTGGGATTTACAATCCTAATGATTTTTTCAGTGTCCTCTATCATCTACTAGATCCCCAGTATAACGCTGTTGCCTG
TGAATGGTTACGAGGGGATGATTTGGATGAAGACGATTTAAAATCTTTGGGCATTAAAAATAGTATAGATTCTGAATATT
CTGCGCAAAAAATTATTACTAACTTGGGAATTATTTCCGCTGCATCTCAACCTATTGTTTTATGTTTTGATAATCTTGAT
AATATTCCTCGCTTGTTAAATGGAACCTTAGATTTACAAGCATTATTTAATGTTAATTCTAGTATTCATACTCACTATCC
ACAAAATTTTCTGATAATTATTAGTATTATTACGAGTACCTGGAAACAAAATTCTAAATTCATTCAACCAGCAGATAAAG
CCAGAGTTAATGCAGGATATTTCCATTTAAAACCAATTACTTTAGAACAGGGTGAAGCTATATTAGCAACTCGTTTAAAT
ACTTTACATTCCCAGGCAACAACTAGGCCTAAATCAGCTACATTTCCTCTGTCAAAAGAAATATTAGAACAGCAGTTTCC
CAGAGGAATAACTCTACCTCGGAATATACTAGAATTGGGACGTAAAGAATATGAGCAGTACAAATTAAAATTATTGAATC
AGACACAGAATAGTCAAGATTTAACACCAGAAACACAATTGGCGACTTTTAAGTTGATTTGGCAAGACCACTACAATAAG
ACTCAGAAAAAAATTAGCAAAATTACTGATTTAGCAGCACCTGAATTGATTCGGATGCTACAAGAAGTATTAAATTCTTT
ACAATGTCAGAAGGTAAAAACTAAATTATTAAGTGGGAAATATGCCAGCCATTCTTTGAGTTATCAAAAACAAAACCAAG
AGCAAATTATCGGTATAGTTTGGACAGAAGATCCAAATATGAATAGTTTTTACAATACAATGAAGGCTTGTCAGAAAGTA
GTGAATAAAAAATTGTGTCAAACTTTATATTTACTGAGAACTTCTGAGGTAGGAAATTCTAAAAATCTTAGCAATAAAAT
ATATAGAAAAATTTTCCAAGGTAAGTCAAAAAATATTCATATTAAACCTAATTTAGAATCGGTGCATTTTTTAGCTACAC
ATCATAGTTTGGTGAATGCTGTCCTCGCTAATGAATTAGTTATTGAAGGTAAGATTATTAATTTGAAAAAGTTTGAAGAA
ATAATTGGTGAATCACAAATTTTCAATAACTGTAGCTTATTAAAATATTTTTCTGTAGTTGTTTCTGTAGGTACTCAAGA
ACAGGAAAATGATCTAGATTTAGATGAGGTCAAGGATTTTGTATTAAATTTAATTAGAAAACAAAGTTTGATGGAACGCA
ACAGCATAATCGAAAATACACTAAATCAATTTGTCAAAATAGAAGGTTCAAAAATTGATATAATAATAACAGAGCTTGAG
GGAGAAAATAAAATAAAAATTATTACTCCTACATTAGGATTAGATGAACAATTAGTTTGTTTTGTTCCTGGTTAA

Upstream 100 bases:

>100_bases
AAAAGTTAATCTAGCAGTATTTTTAGAAACTGGTATAAATCTTCTTATATCTGCTATCGTAATTCTCTAAGCATCCTTAA
AAATACTAACAATTTATATT

Downstream 100 bases:

>100_bases
TAAGGAATTTATAACTGATTATTAGAATGATTAACTATTTTTAATATAAACTATAGTAATTCTCATCTCTGAGTGAAGTG
CAAAATTCTTTCGTTACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 664; Mature: 663

Protein sequence:

>664_residues
MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRI
KKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIY
PSGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD
NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLN
TLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNK
TQKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV
VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEE
IIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELE
GENKIKIITPTLGLDEQLVCFVPG

Sequences:

>Translated_664_residues
MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRI
KKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIY
PSGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD
NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLN
TLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNK
TQKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV
VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEE
IIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELE
GENKIKIITPTLGLDEQLVCFVPG
>Mature_663_residues
ASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRIK
KLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYP
SGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLDN
IPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLNT
LHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKT
QKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKVV
NKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEEI
IGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEG
ENKIKIITPTLGLDEQLVCFVPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75900; Mature: 75769

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00675 SIGMA54_INTERACT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHP
CCCHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RTLILTGDSGSGKSYLLGRIKKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDG
CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
KTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYPSGIYNPNDFFSVLYHLLDP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
QYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD
CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGY
CHHHHHCCCCCCHHHHCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCHHCCCCCCE
FHLKPITLEQGEAILATRLNTLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELG
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
RKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKTQKKISKITDLAAPELIRML
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV
HHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH
VLANELVIEGKIINLKKFEEIIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDF
HHHHHHEEECEEECHHHHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
VLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEGENKIKIITPTLGLDEQLVC
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEEEEECCCCCCCCEEE
FVPG
EECC
>Mature Secondary Structure 
ASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHP
CCHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RTLILTGDSGSGKSYLLGRIKKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDG
CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
KTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYPSGIYNPNDFFSVLYHLLDP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
QYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD
CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGY
CHHHHHCCCCCCHHHHCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCHHCCCCCCE
FHLKPITLEQGEAILATRLNTLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELG
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
RKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKTQKKISKITDLAAPELIRML
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV
HHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH
VLANELVIEGKIINLKKFEEIIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDF
HHHHHHEEECEEECHHHHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
VLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEGENKIKIITPTLGLDEQLVC
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEEEEECCCCCCCCEEE
FVPG
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA