Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

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The map label for this gene is 110834777

Identifier: 110834777

GI number: 110834777

Start: 2193493

End: 2194284

Strand: Direct

Name: 110834777

Synonym: ABO_1916

Alternate gene names: NA

Gene position: 2193493-2194284 (Clockwise)

Preceding gene: 110834774

Following gene: 110834778

Centisome position: 70.3

GC content: 52.9

Gene sequence:

>792_bases
ATGAGCTCGTGTTATATGATCACCCCCATTCCAAAAATAACGGACAAGGATTCCTCGCTTCCTATGGACAGGCTTCGACC
TTTTGGCCTTCTTTGGCTTTTGCTTGCATTCTCTACGCTTTGCTCACCGGCATTCAGTAATGAAGATCAGGATTGGACCC
TGGTCAGTGACCGCAATGATATTCAGGTGTATATGAAGCACCGGGATGAGTCACGCCTGAAGACGTTTCGTGGCGTCACC
CGCTTCCCCCTGAAAGACGAGTACTCCCTGGTCGCACTGCTCAACGATTACCCCTCGTATCCTAAATGGCTGCATTTTGT
CGATAGTGCCGAGGAGTTCGGCCGCGCCAACCCCCTCGACCGTCAGTTACGCTTCACCACTCAACTGCCTTGGCCGCTGG
CCGACCGAGAAGCCGTATTACGCGCAAAAGTGACCCAAGTGCTGGATCCTAATCCCAATTCGGTGAAAATCACCCTGATC
AACCAACCGGATGCCCTGCCCCCCACCAAGAACTATATCCGCTTTCCTGAAATGACCGGGATACTAGCCTTTAGCCGCCT
GAGCAACCACCAAATAGAAATGACCTATGAACTGATTCTGGACCCGGGCGGCTACATCCCCGCCTGGATTGCCAATATTC
TGCTACGCGATGCGCCTTACTTCACGCTAGAACGACTTCGCCGTATCATCAACAAACCGGAATACCAGAATCATTATTAC
GATTACATTGACCTTAATGGCCCGGGCAGGCTTGTAGACGCGACGCCTCAGGCCGCACCAGCGCCCCACTGA

Upstream 100 bases:

>100_bases
GCCGTTGATACATATTTGCTACACCGACTGTCCGATTACGCGCAGAAGATACACTAGAGAGTGATCAAAATGTATTCAGC
GGGACAAGGATAATGTCATA

Downstream 100 bases:

>100_bases
CCGACCAAAGCGGCATCATCCAAAGGTAACCAACGTAAATGCTGGCCTGTCATTTTCGGCCAGACCTCCGCTACCATAGC
ACTCAGTTTCTGTACGAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVT
RFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLI
NQPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY
DYIDLNGPGRLVDATPQAAPAPH

Sequences:

>Translated_263_residues
MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVT
RFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLI
NQPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY
DYIDLNGPGRLVDATPQAAPAPH
>Mature_262_residues
SSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVTR
FPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLIN
QPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYYD
YIDLNGPGRLVDATPQAAPAPH

Specific function: May play a role in the interaction of the bacterium with animal cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 START domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002913 [H]

Pfam domain/function: PF01852 START [H]

EC number: NA

Molecular weight: Translated: 30428; Mature: 30297

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRND
CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
IQVYMKHRDESRLKTFRGVTRFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLD
EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
RQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLINQPDALPPTKNYIRFPEMTG
HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEECCCHHH
ILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY
HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCE
DYIDLNGPGRLVDATPQAAPAPH
EEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
SSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRND
CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
IQVYMKHRDESRLKTFRGVTRFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLD
EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
RQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLINQPDALPPTKNYIRFPEMTG
HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEECCCHHH
ILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY
HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCE
DYIDLNGPGRLVDATPQAAPAPH
EEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 11276083 [H]