Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is gspL

Identifier: 110834180

GI number: 110834180

Start: 1495360

End: 1496499

Strand: Direct

Name: gspL

Synonym: ABO_1319

Alternate gene names: NA

Gene position: 1495360-1496499 (Clockwise)

Preceding gene: 110834179

Following gene: 110834181

Centisome position: 47.93

GC content: 54.3

Gene sequence:

>1140_bases
GTGGCAGAGGCTCCACTGATTTATTTAAGCGGTGCAGGGGGAACGGAACTGGATCTTGAACATCCGGTGCTGTTGCAGCG
AAACCCTGCGGAACACGTCCAGGTCATGAGCCTGCGCGAAGCGCTGGAACAGTCTGCCGGCCAGACCCTCCATGTCATTG
TCAGCGTAGCATTTGCCCGGCTAACCCATGTTAGCCTGAGCCGAAAACAGGCACGTCATATGCAGCGCATTCTTCCGTAT
TTGCTGGAAGAACAGATGCTGGACAACCCTGAATCACTGTGGTTTGTTTCCCGCAAAGGCAGCGGTGATGACTATGAAGT
GACCGCCATTGCTCGACAATTTATCGAGCAACTCAAACGGTGGGCCGCAGAACAAGACGTACTGATCACCTCCCTGCAGG
TGGACGCTGAGCGGTTGCAGGGTCAAGCACCTCTGATTGCTGAGTTGGACGAAAATCAGACGCTATTAATGGCAGACCGA
GATCGTTGCCTAGTGGTTGATGCTCAGCAGCGTGATGGTGTGCAGGCCCTGTTTGGCGACAGCCTCAATGAGCCTATGGT
GTTATCCGGCCCAACGGCGTTTGTTGACGCCTTGCGTAACGGTTCAGGGCAGGAATTACTCACAGGCCCCTATGCCCCAA
AACAAAAGAAAGGCAGTAATACAACGTTTGCTCCTTGGAAGCCACTTGGCATTCTTGCTGCATCCGTATTTGTACTGGCT
CTGGTGGCCATCTGGGTGCAACAGTGGCGTTATAATCAGGCGGCCGAAGCGACTTTCGCCGATGCCCAGACGCTATTCGA
GAACCTGTTCCCCGGTGATAAGGCCTCTGCGGCCCTGAGTCGCCAGTTTGAGGGCCGGCTTGCTCGCCTTGGTGGCGGTA
GCAAGTCGGGGCAGGCTGATTTCTTCCCACTTCTGAGACCAGTGGCGCAAGTGTTGAAAGAGATAAACGTTGACCCCAAG
CGGCTGCAATACGATCAACGTGAAAATACGCTGCTATTGGATGTTGGCGCTAAGGATTATGCCCAACTGGAACAACTTCA
GAATGCGCTCAAAAAACAGGGAGCACGCGCCTCAATAGCAAATTATCGCAATAGTGCTCAGGGCGTGAGCGCGCGAATCA
AGGTGGAGCAGCCGGGATGA

Upstream 100 bases:

>100_bases
AACGGAGCAGGCTGTTAGAAAGTGCATTAAGCGTCGGCCATGCCAGACGGACACATGCAAAGATAATAACGCGGATATAA
CGACCAAAGGACACAACAGC

Downstream 100 bases:

>100_bases
GCAGTGCAGCAGAACTGAAGAAACTGGCGGCTCAACGTCGAGAACAGGCAGTACAGTGGTACGAAAGTAGAGAACCCCGA
GAACAACACATCCTGAAAAT

Product: general secretion pathway protein L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPY
LLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADR
DRCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA
LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPK
RLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG

Sequences:

>Translated_379_residues
MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPY
LLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADR
DRCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA
LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPK
RLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG
>Mature_378_residues
AEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPYL
LEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRD
RCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLAL
VAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPKR
LQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG

Specific function: Unknown

COG id: COG3297

COG function: function code U; Type II secretory pathway, component PulL

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41826; Mature: 41695

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFAR
CCCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LTHVSLSRKQARHMQRILPYLLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
WAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRDRCLVVDAQQRDGVQALFGD
HCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHHCC
SLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA
CCCCCEEEECCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQAD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
FFPLLRPVAQVLKEINVDPKRLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIA
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
NYRNSAQGVSARIKVEQPG
HHCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
AEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFAR
CCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LTHVSLSRKQARHMQRILPYLLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
WAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRDRCLVVDAQQRDGVQALFGD
HCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHHCC
SLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA
CCCCCEEEECCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQAD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
FFPLLRPVAQVLKEINVDPKRLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIA
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
NYRNSAQGVSARIKVEQPG
HHCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA