| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is bztB [H]
Identifier: 110678762
GI number: 110678762
Start: 1373768
End: 1374982
Strand: Direct
Name: bztB [H]
Synonym: RD1_1445
Alternate gene names: 110678762
Gene position: 1373768-1374982 (Clockwise)
Preceding gene: 110678761
Following gene: 110678763
Centisome position: 33.24
GC content: 55.8
Gene sequence:
>1215_bases ATGACAATAATGACGGACCCACCGAGGGAGTCGTTCCGGCTATCCATGCTGCTGAACGACACGCGCTACCGGTCGATTAC GTTTCAGGCGATCGCGCTTTTGGCCCTGATCGTGGCCATTGCCTATCTCGCGAACAATCTGTTTACCAATCTCGCCGCGC AGGGCCTGAACATCTCATATGGGTTTCTGGGTGATCCGGCGGGCTATGACATCAACCAGCGTCTGATTGAATACGATAGC CAATCCTCCAATGCGCGTGCGGCTCTCGTCGGTATCCTGAACACCCTGCTTGTGGCGTTTCTGGCCTGTATCATGGCGAC TGTCTTTGGTGTGATCGCAGGGGTTTTGCGGCTGTCCAACAACTGGCTTGTTTCCAAGCTGATGTCTTTCTATGTCGAAA TTTTCCGCAACATTCCCGTCCTGATCTGGATCATCATCATCTTTACGATCATGACCGCCGTGATGCCTGCCCCGCGCGCT TTCCGGGGTGACGAACCCGAAGCGACGATGCTGCTGGGGGCCTTTGCCTTTACCAACCGCGGTATCTACATCCCTGCGCC GATCTGGGGACCGGGGTCTATGGTCGTCGTTGCGACCTTTATTGCGTCGGTCGTGGGCGTCTTTGCCTATCGTCGCTACG CCAAAAACCTGCTGTATCAAACGGGGCGTCTGTTGCCCATGGGATGGCCGAGCCTTGCCATCTTTTTCGTACCGACCATC GTGATGTTTTTCATCATGGGGCGTCCCATCGGATTGGACATACCCGAGCTGGGTGGCTTCAACTTTCGGGGTGGTATCCA GATTGGTGCACCGCTGATCGCGCTTTGGTTTGCCTTGTCCATCTACACCGGTGCTTTTATCGCTGAAAACGTGCGTGCGG GTATTCAGGCCGTGTCCAAAGGCCAGACCGAAGCGGCATCCGCCCTCGGGCTGCATCCGGGACGCGTCATGAACCTTGTC GTGCTACCGCAGGCCCTGCGCGTGATCATTCCGCCGCTCATTTCACATTACCTCAACATCACCAAGAACTCATCGCTGGC GATTGCCGTGGGCTATGCGGATATCACTGCGACGCTTGGCGGCATTACCCTGAACCAGACCGGTCGCGCCATTGAATGCG TGTTGCTGCTGATGCTGTTCTATCTTGTCATATCGCTGTCCATTTCGGCGATCATGAACGTCTACAACAAAACCGTCACC CTGAAGGAGCGTTGA
Upstream 100 bases:
>100_bases GCGCCCCTGGCACATTGGACGACCAACATAAAATCCCGGCAGGCCAGAGGCGCACAAGCGTCCACAAAGGCGAATAGCCG GAACCACGGGGAAGACAATA
Downstream 100 bases:
>100_bases TTGATGACCGATACAAACCAACACTCCGCTTCCTTTGTGCGCACGGAAACCATCCCCGAACGTGCTCCGCCTGTTACGGC ATCCGGCCCGGTGAAATGGG
Product: glutamate/glutamine/aspartate/asparagine transport system permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTIMTDPPRESFRLSMLLNDTRYRSITFQAIALLALIVAIAYLANNLFTNLAAQGLNISYGFLGDPAGYDINQRLIEYDS QSSNARAALVGILNTLLVAFLACIMATVFGVIAGVLRLSNNWLVSKLMSFYVEIFRNIPVLIWIIIIFTIMTAVMPAPRA FRGDEPEATMLLGAFAFTNRGIYIPAPIWGPGSMVVVATFIASVVGVFAYRRYAKNLLYQTGRLLPMGWPSLAIFFVPTI VMFFIMGRPIGLDIPELGGFNFRGGIQIGAPLIALWFALSIYTGAFIAENVRAGIQAVSKGQTEAASALGLHPGRVMNLV VLPQALRVIIPPLISHYLNITKNSSLAIAVGYADITATLGGITLNQTGRAIECVLLLMLFYLVISLSISAIMNVYNKTVT LKER
Sequences:
>Translated_404_residues MTIMTDPPRESFRLSMLLNDTRYRSITFQAIALLALIVAIAYLANNLFTNLAAQGLNISYGFLGDPAGYDINQRLIEYDS QSSNARAALVGILNTLLVAFLACIMATVFGVIAGVLRLSNNWLVSKLMSFYVEIFRNIPVLIWIIIIFTIMTAVMPAPRA FRGDEPEATMLLGAFAFTNRGIYIPAPIWGPGSMVVVATFIASVVGVFAYRRYAKNLLYQTGRLLPMGWPSLAIFFVPTI VMFFIMGRPIGLDIPELGGFNFRGGIQIGAPLIALWFALSIYTGAFIAENVRAGIQAVSKGQTEAASALGLHPGRVMNLV VLPQALRVIIPPLISHYLNITKNSSLAIAVGYADITATLGGITLNQTGRAIECVLLLMLFYLVISLSISAIMNVYNKTVT LKER >Mature_403_residues TIMTDPPRESFRLSMLLNDTRYRSITFQAIALLALIVAIAYLANNLFTNLAAQGLNISYGFLGDPAGYDINQRLIEYDSQ SSNARAALVGILNTLLVAFLACIMATVFGVIAGVLRLSNNWLVSKLMSFYVEIFRNIPVLIWIIIIFTIMTAVMPAPRAF RGDEPEATMLLGAFAFTNRGIYIPAPIWGPGSMVVVATFIASVVGVFAYRRYAKNLLYQTGRLLPMGWPSLAIFFVPTIV MFFIMGRPIGLDIPELGGFNFRGGIQIGAPLIALWFALSIYTGAFIAENVRAGIQAVSKGQTEAASALGLHPGRVMNLVV LPQALRVIIPPLISHYLNITKNSSLAIAVGYADITATLGGITLNQTGRAIECVLLLMLFYLVISLSISAIMNVYNKTVTL KER
Specific function: Part of a binding-protein-dependent transport system for glutamate, glutamine, aspartate and asparagine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4597
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI48994930, Length=398, Percent_Identity=41.7085427135678, Blast_Score=281, Evalue=8e-77, Organism=Escherichia coli, GI1786874, Length=169, Percent_Identity=34.3195266272189, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786873, Length=126, Percent_Identity=34.9206349206349, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1788226, Length=140, Percent_Identity=31.4285714285714, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87082239, Length=119, Percent_Identity=33.6134453781513, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1787030, Length=131, Percent_Identity=33.587786259542, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 44058; Mature: 43927
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIMTDPPRESFRLSMLLNDTRYRSITFQAIALLALIVAIAYLANNLFTNLAAQGLNISY CCCCCCCCHHHHEEHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE GFLGDPAGYDINQRLIEYDSQSSNARAALVGILNTLLVAFLACIMATVFGVIAGVLRLSN CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NWLVSKLMSFYVEIFRNIPVLIWIIIIFTIMTAVMPAPRAFRGDEPEATMLLGAFAFTNR CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC GIYIPAPIWGPGSMVVVATFIASVVGVFAYRRYAKNLLYQTGRLLPMGWPSLAIFFVPTI CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH VMFFIMGRPIGLDIPELGGFNFRGGIQIGAPLIALWFALSIYTGAFIAENVRAGIQAVSK HHHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQTEAASALGLHPGRVMNLVVLPQALRVIIPPLISHYLNITKNSSLAIAVGYADITATLG CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHC GITLNQTGRAIECVLLLMLFYLVISLSISAIMNVYNKTVTLKER CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC >Mature Secondary Structure TIMTDPPRESFRLSMLLNDTRYRSITFQAIALLALIVAIAYLANNLFTNLAAQGLNISY CCCCCCCHHHHEEHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE GFLGDPAGYDINQRLIEYDSQSSNARAALVGILNTLLVAFLACIMATVFGVIAGVLRLSN CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NWLVSKLMSFYVEIFRNIPVLIWIIIIFTIMTAVMPAPRAFRGDEPEATMLLGAFAFTNR CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC GIYIPAPIWGPGSMVVVATFIASVVGVFAYRRYAKNLLYQTGRLLPMGWPSLAIFFVPTI CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH VMFFIMGRPIGLDIPELGGFNFRGGIQIGAPLIALWFALSIYTGAFIAENVRAGIQAVSK HHHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQTEAASALGLHPGRVMNLVVLPQALRVIIPPLISHYLNITKNSSLAIAVGYADITATLG CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHC GITLNQTGRAIECVLLLMLFYLVISLSISAIMNVYNKTVTLKER CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8809753 [H]