| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is bztC [H]
Identifier: 110678763
GI number: 110678763
Start: 1374986
End: 1376284
Strand: Direct
Name: bztC [H]
Synonym: RD1_1446
Alternate gene names: 110678763
Gene position: 1374986-1376284 (Clockwise)
Preceding gene: 110678762
Following gene: 110678777
Centisome position: 33.27
GC content: 57.27
Gene sequence:
>1299_bases ATGACCGATACAAACCAACACTCCGCTTCCTTTGTGCGCACGGAAACCATCCCCGAACGTGCTCCGCCTGTTACGGCATC CGGCCCGGTGAAATGGGTGCGTGAAAACCTGTTTGCGACGCCGGCGAATAGCGTTTTGACGATCATCGCGCTTTACTTCA TTTACCTGCTTCTGGCGGGAAGCCTGCCGTGGCTGCTGAATGGCGTCTGGACGACCAGCAGCCTGTCTGAGTGTCGTGAA GTGCTTGGCGGCGCGGTCGGTGCCTGTTTCTCGGTTCTGACGGAGCGTTTGAACCAGTTGCTCTTCGGGTTCCAATACCC GAGCGAGCTTTACTGGCGGCCGGCGCTGGCTCTGGTATTGCTCTTCGTTGCGGGTGCGCCAGTGCTGTTTTTCGATCTGC CACGCAAGCTGTTGATCTTCACGGCGCTTTATCCCTTCATTGCCTATTACCTCATCTGGGGCGGCGCGCTGGGCGTGCCT GTTCTGGCGTTGGTGGGCTGTGTCGCGGGCTATCTCGTCTACAGTCGCTTTGTGGCCGGTAGCTTTGCCAAGGGCTTTTT CGGCGGGATTGCTGCGGCATTGATCGTCTGGAACCTTGGCGGGTTGCTGATCCCTGAAAACGCGAATGACACGGCGATGA TGACGGCGGTGCCAAGCCGTGACCTTGGTGGTTTCATGCTCAACATGATGCTGGGTGTGACCTGTGTGTCGCTGTCCGTG CCATTGGGGATCGTGCTGGCGCTTGGTCGTCAGTCGAGCATGCCGCTGATCAAATGGATTTGTGTTATCTTTATCGAATT CATTCGTGGCGTGCCCCTGATCACCTTGTTGTTCGTGGCTTCGGTGATGCTGGCCTATTTCTTTCCGCCGGAATCCACGG TCGATCTGTTCCTGCGTGTGGTGATCATGATCACGATGTTCTCCTCGGCCTACATTGCCGAGGTGATCCGGGGTGGCCTC GCAGCCCTGCCCAAGGGACAATACGAGGGGGCGGACAGCCTTGGGCTGGATTATGCGCAGGCAACCCGTCTGATCATCCT GCCGCAGGCGCTGAAAATTTCGATCCCGGGCATCGTGAATGTGGCCGTTGGGCTTTTCAAGGATACCACGCTAGTGTCGG TCATTTCGATGTTCGACCTTGTTGGGATGATCCGGGGGCCGATCCTCGCCTCGACGGATTGGGCAGGCGTCTATTGGGAA CTTTATGGTTTCGCCGCTCTGCTGTTCTTTGTCGTCTGCTACGGCATTTCGCAATATTCACAATGGCTCGAACGTCGCCT CGCGACCGATCACAGATAA
Upstream 100 bases:
>100_bases CGTGTTGCTGCTGATGCTGTTCTATCTTGTCATATCGCTGTCCATTTCGGCGATCATGAACGTCTACAACAAAACCGTCA CCCTGAAGGAGCGTTGATTG
Downstream 100 bases:
>100_bases GGAGGCCTGACCAATGGCTGAACAAGCAACGCAAATGCAGGTCTCTGACGAGATCGCGATCACCATCAGCAACATGAACA AATGGTACGGATCGTTCCAC
Product: amino acid ABC transporter, permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MTDTNQHSASFVRTETIPERAPPVTASGPVKWVRENLFATPANSVLTIIALYFIYLLLAGSLPWLLNGVWTTSSLSECRE VLGGAVGACFSVLTERLNQLLFGFQYPSELYWRPALALVLLFVAGAPVLFFDLPRKLLIFTALYPFIAYYLIWGGALGVP VLALVGCVAGYLVYSRFVAGSFAKGFFGGIAAALIVWNLGGLLIPENANDTAMMTAVPSRDLGGFMLNMMLGVTCVSLSV PLGIVLALGRQSSMPLIKWICVIFIEFIRGVPLITLLFVASVMLAYFFPPESTVDLFLRVVIMITMFSSAYIAEVIRGGL AALPKGQYEGADSLGLDYAQATRLIILPQALKISIPGIVNVAVGLFKDTTLVSVISMFDLVGMIRGPILASTDWAGVYWE LYGFAALLFFVVCYGISQYSQWLERRLATDHR
Sequences:
>Translated_432_residues MTDTNQHSASFVRTETIPERAPPVTASGPVKWVRENLFATPANSVLTIIALYFIYLLLAGSLPWLLNGVWTTSSLSECRE VLGGAVGACFSVLTERLNQLLFGFQYPSELYWRPALALVLLFVAGAPVLFFDLPRKLLIFTALYPFIAYYLIWGGALGVP VLALVGCVAGYLVYSRFVAGSFAKGFFGGIAAALIVWNLGGLLIPENANDTAMMTAVPSRDLGGFMLNMMLGVTCVSLSV PLGIVLALGRQSSMPLIKWICVIFIEFIRGVPLITLLFVASVMLAYFFPPESTVDLFLRVVIMITMFSSAYIAEVIRGGL AALPKGQYEGADSLGLDYAQATRLIILPQALKISIPGIVNVAVGLFKDTTLVSVISMFDLVGMIRGPILASTDWAGVYWE LYGFAALLFFVVCYGISQYSQWLERRLATDHR >Mature_431_residues TDTNQHSASFVRTETIPERAPPVTASGPVKWVRENLFATPANSVLTIIALYFIYLLLAGSLPWLLNGVWTTSSLSECREV LGGAVGACFSVLTERLNQLLFGFQYPSELYWRPALALVLLFVAGAPVLFFDLPRKLLIFTALYPFIAYYLIWGGALGVPV LALVGCVAGYLVYSRFVAGSFAKGFFGGIAAALIVWNLGGLLIPENANDTAMMTAVPSRDLGGFMLNMMLGVTCVSLSVP LGIVLALGRQSSMPLIKWICVIFIEFIRGVPLITLLFVASVMLAYFFPPESTVDLFLRVVIMITMFSSAYIAEVIRGGLA ALPKGQYEGADSLGLDYAQATRLIILPQALKISIPGIVNVAVGLFKDTTLVSVISMFDLVGMIRGPILASTDWAGVYWEL YGFAALLFFVVCYGISQYSQWLERRLATDHR
Specific function: Part of a binding-protein-dependent transport system for glutamate, glutamine, aspartate and asparagine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI87082239, Length=418, Percent_Identity=36.8421052631579, Blast_Score=256, Evalue=2e-69, Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=29.7674418604651, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1788226, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI48994930, Length=129, Percent_Identity=32.5581395348837, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787030, Length=172, Percent_Identity=31.3953488372093, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1786874, Length=243, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=28.5046728971963, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788645, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787087, Length=126, Percent_Identity=34.9206349206349, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 47084; Mature: 46953
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTNQHSASFVRTETIPERAPPVTASGPVKWVRENLFATPANSVLTIIALYFIYLLLAG CCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC SLPWLLNGVWTTSSLSECREVLGGAVGACFSVLTERLNQLLFGFQYPSELYWRPALALVL CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LFVAGAPVLFFDLPRKLLIFTALYPFIAYYLIWGGALGVPVLALVGCVAGYLVYSRFVAG HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH SFAKGFFGGIAAALIVWNLGGLLIPENANDTAMMTAVPSRDLGGFMLNMMLGVTCVSLSV HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH PLGIVLALGRQSSMPLIKWICVIFIEFIRGVPLITLLFVASVMLAYFFPPESTVDLFLRV HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VIMITMFSSAYIAEVIRGGLAALPKGQYEGADSLGLDYAQATRLIILPQALKISIPGIVN HHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCHHHHCEEEEECHHHHEECCHHHH VAVGLFKDTTLVSVISMFDLVGMIRGPILASTDWAGVYWELYGFAALLFFVVCYGISQYS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QWLERRLATDHR HHHHHHHCCCCC >Mature Secondary Structure TDTNQHSASFVRTETIPERAPPVTASGPVKWVRENLFATPANSVLTIIALYFIYLLLAG CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC SLPWLLNGVWTTSSLSECREVLGGAVGACFSVLTERLNQLLFGFQYPSELYWRPALALVL CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LFVAGAPVLFFDLPRKLLIFTALYPFIAYYLIWGGALGVPVLALVGCVAGYLVYSRFVAG HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH SFAKGFFGGIAAALIVWNLGGLLIPENANDTAMMTAVPSRDLGGFMLNMMLGVTCVSLSV HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH PLGIVLALGRQSSMPLIKWICVIFIEFIRGVPLITLLFVASVMLAYFFPPESTVDLFLRV HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VIMITMFSSAYIAEVIRGGLAALPKGQYEGADSLGLDYAQATRLIILPQALKISIPGIVN HHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCHHHHCEEEEECHHHHEECCHHHH VAVGLFKDTTLVSVISMFDLVGMIRGPILASTDWAGVYWELYGFAALLFFVVCYGISQYS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QWLERRLATDHR HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8809753 [H]