| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is bztA [H]
Identifier: 110678761
GI number: 110678761
Start: 1372618
End: 1373634
Strand: Direct
Name: bztA [H]
Synonym: RD1_1444
Alternate gene names: 110678761
Gene position: 1372618-1373634 (Clockwise)
Preceding gene: 110678760
Following gene: 110678762
Centisome position: 33.21
GC content: 59.78
Gene sequence:
>1017_bases ATGAAAAAATCAGTACTTTTAGGTGCGCTGACGATTGCTGGTCTTGCGGCCGGCGCTGCGGCTGCCGGTACTTTGGATGA CGTGAAAGCGCGCGGCACATTGAACTGTGGCGTGACAACCGGTCTCGTCGGCTTTGCCGCGCCGAATGCGGATGGCGAAT GGAACGGGTTTGACGTCGCAGTCTGCCGCGCGGTTGCCGCTGCGGTTCTGGGCGATGCAACCGCCGTGGAATTCGTGCCG ACAACAGGCAAAACGCGGTTCACAGCACTTGCCTCTGGCGAAATCGACATGCTGGCGCGCAACACCACATGGACGTTCTC CCGCGATGTTGACCTGAAATTCACATTCGTGGGCATCAACTACTATGACGGCCAGGGCTTCATGGTGCCGAAATCGCTTG GCGTCACATCGGCAAAAGAACTCGATGGCGCAACGGTTTGTATCCAGACCGGCACAACCACCGAGCTGAACCTCGCGGAT TTCTTCCGTGCCAACAACATCAGCTATGAGCCTGTTCCGATCGAGACGAACGCCGAAGGCCAGCAGCAGTATCTCGCCGG TGCCTGTGACACGTACACGACAGACGCCTCCGGTCTGGCGGCGACACGTGCGAGCTTCGAGAACCCGTCCGATCACGTTC TGCTGCCCGAAATCATCTCCAAAGAGCCGCTGGGCCCGCTTGTGCGCCACGGCGATGACGAATGGGGTGACGTGGTGCGC TGGACGCTGAACGCGCTGATCACGGCAGAAGAGCTGGGTGTGACATCGGCCAACGTCAGCGAGATGGCGACAGGGTCCAA CAACCCGGAAGTCAAGCGTTTGCTCGGCACCGAGGGCACCCTTGGCGAAATGCTGGGCCTTGATGCCGACTGGGCCATGA GAGCCATCGCGTCGCAGGGTAACTACGGCGAAATCTTTGCCAAGAACATTGGCGAGGATACCCCGATTGCGCTGTCGCGC GGTCTGAACGCACAGTGGACAAACGGCGGCCTGATCTACTCGCCTCCGTTCCGTTAA
Upstream 100 bases:
>100_bases TGCGACCACTCGGAGCACACAAAGTGCTCAAGTGTCACCGCCGGTTATGCAACCGGTCGACCCGCTGTTGATAAAGCGGA AAATCAGGAAGAGGTTTAAA
Downstream 100 bases:
>100_bases GAACTGAAAACGCAGGGGCGCAGAGTTAAATCTGCGCCCCTGGCACATTGGACGACCAACATAAAATCCCGGCAGGCCAG AGGCGCACAAGCGTCCACAA
Product: glutamate/glutamine/aspartate/asparagine-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MKKSVLLGALTIAGLAAGAAAAGTLDDVKARGTLNCGVTTGLVGFAAPNADGEWNGFDVAVCRAVAAAVLGDATAVEFVP TTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFTFVGINYYDGQGFMVPKSLGVTSAKELDGATVCIQTGTTTELNLAD FFRANNISYEPVPIETNAEGQQQYLAGACDTYTTDASGLAATRASFENPSDHVLLPEIISKEPLGPLVRHGDDEWGDVVR WTLNALITAEELGVTSANVSEMATGSNNPEVKRLLGTEGTLGEMLGLDADWAMRAIASQGNYGEIFAKNIGEDTPIALSR GLNAQWTNGGLIYSPPFR
Sequences:
>Translated_338_residues MKKSVLLGALTIAGLAAGAAAAGTLDDVKARGTLNCGVTTGLVGFAAPNADGEWNGFDVAVCRAVAAAVLGDATAVEFVP TTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFTFVGINYYDGQGFMVPKSLGVTSAKELDGATVCIQTGTTTELNLAD FFRANNISYEPVPIETNAEGQQQYLAGACDTYTTDASGLAATRASFENPSDHVLLPEIISKEPLGPLVRHGDDEWGDVVR WTLNALITAEELGVTSANVSEMATGSNNPEVKRLLGTEGTLGEMLGLDADWAMRAIASQGNYGEIFAKNIGEDTPIALSR GLNAQWTNGGLIYSPPFR >Mature_338_residues MKKSVLLGALTIAGLAAGAAAAGTLDDVKARGTLNCGVTTGLVGFAAPNADGEWNGFDVAVCRAVAAAVLGDATAVEFVP TTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFTFVGINYYDGQGFMVPKSLGVTSAKELDGATVCIQTGTTTELNLAD FFRANNISYEPVPIETNAEGQQQYLAGACDTYTTDASGLAATRASFENPSDHVLLPEIISKEPLGPLVRHGDDEWGDVVR WTLNALITAEELGVTSANVSEMATGSNNPEVKRLLGTEGTLGEMLGLDADWAMRAIASQGNYGEIFAKNIGEDTPIALSR GLNAQWTNGGLIYSPPFR
Specific function: Part of a binding-protein-dependent transport system for glutamate, glutamine, aspartate and asparagine [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005768 - InterPro: IPR001638 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 35528; Mature: 35528
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSVLLGALTIAGLAAGAAAAGTLDDVKARGTLNCGVTTGLVGFAAPNADGEWNGFDVA CCCCEEEHHHHHHHHHHCCHHCCCHHHHHCCCEEECCHHHCEEEEECCCCCCCCCCHHHH VCRAVAAAVLGDATAVEFVPTTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFTFVGIN HHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECCEEEEECCCCEEEEEEEEE YYDGQGFMVPKSLGVTSAKELDGATVCIQTGTTTELNLADFFRANNISYEPVPIETNAEG EECCCCEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCEECCCCCCH QQQYLAGACDTYTTDASGLAATRASFENPSDHVLLPEIISKEPLGPLVRHGDDEWGDVVR HHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCEECHHHHCCCCCCHHHHCCCCHHHHHHH WTLNALITAEELGVTSANVSEMATGSNNPEVKRLLGTEGTLGEMLGLDADWAMRAIASQG HHHHHHEEHHHHCCCCCCHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHCCC NYGEIFAKNIGEDTPIALSRGLNAQWTNGGLIYSPPFR CCCCHHHHHCCCCCCCHHHCCCCCEECCCCEEECCCCC >Mature Secondary Structure MKKSVLLGALTIAGLAAGAAAAGTLDDVKARGTLNCGVTTGLVGFAAPNADGEWNGFDVA CCCCEEEHHHHHHHHHHCCHHCCCHHHHHCCCEEECCHHHCEEEEECCCCCCCCCCHHHH VCRAVAAAVLGDATAVEFVPTTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFTFVGIN HHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECCEEEEECCCCEEEEEEEEE YYDGQGFMVPKSLGVTSAKELDGATVCIQTGTTTELNLADFFRANNISYEPVPIETNAEG EECCCCEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCEECCCCCCH QQQYLAGACDTYTTDASGLAATRASFENPSDHVLLPEIISKEPLGPLVRHGDDEWGDVVR HHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCEECHHHHCCCCCCHHHHCCCCHHHHHHH WTLNALITAEELGVTSANVSEMATGSNNPEVKRLLGTEGTLGEMLGLDADWAMRAIASQG HHHHHHEEHHHHCCCCCCHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHCCC NYGEIFAKNIGEDTPIALSRGLNAQWTNGGLIYSPPFR CCCCHHHHHCCCCCCCHHHCCCCCEECCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8809753 [H]