Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is moxF [H]

Identifier: 110678237

GI number: 110678237

Start: 865703

End: 867505

Strand: Direct

Name: moxF [H]

Synonym: RD1_0890

Alternate gene names: 110678237

Gene position: 865703-867505 (Clockwise)

Preceding gene: 110678236

Following gene: 110678238

Centisome position: 20.95

GC content: 57.13

Gene sequence:

>1803_bases
ATGAGAAAGCTATCGCTTTTGACTTCTGGGATCGCTCTTTGCGCGGCCAGTATGGCTTTTGCAAATGACGACCTGGTCAC
GCAAATGAGTGATTCCAAGCAATGGGCCATTCAGACGGGTGACTACAAAAACCAACGCTACTCTGCACTTGACCAGATCA
ACGAAGAAAACGTCGGCGATCTGCAGGTTGCATGGACATTCTCGACGGGTGTTCTGCGGGGCCATGAGGGTTCGCCTCTG
GTGATTGGTGATGTGATGTACGTGCACACGCCATTTCCAAACATCGTCTACGCGCTGGACCTTGCCAACGAGGGCAAGAT
CATCTGGAAGTATGAGCCAAAGCAGGACCCGGACGTCATTCCGGTGATGTGCTGTGACACCGTTTATCGCGGTGTGGCTT
ATGCCGATAACAAGATCTTCCTGCATCAGGCGGATACAACCGTTGTCGCGCTCAACGCTGAAACCGGCGCTGTTGAATGG
TCCGTCGTAAATGGTGATCCTGCCATCGGCGAGACGAACACCGCAACCGTTCTGCCCGTCAAGGACAAGGTCATCGTCGG
GATTTCCGGTGGTGAATTCGGTGTGCGCGGCCATGTGACAGCGTACAACATGGAAACGGGTGAAAAGGAATGGCGTGCCT
ATTCCGTCGGTCCGGATGATGAGATGCTGGTTGATCCGGTGAACACGACGCATCTGGGCAAACCCGTTGGTGAAAACTCC
AGCCTCAACAGCTGGGAAGGCGACCAGTGGATGATCGGTGGCGGCACCACATGGGGCTGGTATGCGGCTGATCTTGAAGA
GAACCTGATGTACTACGGTACAGGGAACCCTTCGACATGGAACCCGGCCCAGCGTCCGGGCGACAACCGCTGGACCATGA
CGGTCATGGCGCGTGACATCGACACCGGTGTTGCAAGGTGGCTCTACCAGATGACCCCGCACGACGAGTGGGATTATGAC
GGCGTCAACGAGAACATTCTCACCGAGCAGGAAATCGACGGTGTAGAGCGCAAGCTGTTGACCCGGTTCGACCGCAACGG
TCTGGCCTATACGATGGACCGTGTGACGGGCGAATTGCTCGTGGCTGAAAAGTTCGACCCGGTCGTGAACTGGACCTCCG
GTGTTGACATGGATCCCGAAAGCGAAACCTACGGTCGTCCGCAGGTTGTGGCTCAGTACTCAACGGCGCAAAACGGTGAA
GACGTGAACTCCACCGGTATCTGCCCTGCGGCTCTGGGCACCAAAGACCAGCAGCCAGCGGCCTATTCGCCGCGCACCGA
AGTGTTCTACGTGCCGACAAACCACGTCTGCATGGACTATGAGCCCTTCCGCGTGTCCTACACCGCTGGTCAGCCCTACG
TCGGTGCAACCCTGTCGATGTACCCGGCACCTGACAGCCATGGCGGCATGGGTAACTTCATCGCCTGGGACAACATCAAC
GGTGAGATCCTGTGGTCCATCCCCGAGAAGTTCTCGGTCTGGTCCGGTGCTCTCGCAACTGCCGGTGACGTTGTGTTCTA
CGGAACGCTTGAAGGTCACCTGAAAGCGGTGAGCGCCAATACTGGTGAAGAGTTGTACCGCTTCAAGACACCATCGGGCA
TCATCGGTAACGTCATGACCTATGAGCATGATGGCCGTCAGTACGTCGGTATCCTCTCCGGTGTCGGTGGTTGGGCCGGT
ATTGGTCTGGCGGCTGGTCTGACAAACCCGAACGACGGTCTGGGTGCTGTGGGCGGTTATGCAGCCCTGAGCGACTATAC
CGCGCTGGGTGGACAGCTGACTGTCTTCGCTCTGCCGAACTAA

Upstream 100 bases:

>100_bases
ACAGACCTACTCCACAGGAATAACCCGGTACCCTGTCCGTTCCTTGGTCAGGTGTATCATTCCAGCGGCAATCCTGCCGC
ATTCTAGGGAGGTAATTTAG

Downstream 100 bases:

>100_bases
GCGGTGGCTTGATCCAGCATGAACGAATGGCGCGGCCGAACGGTCGCGCCACTTCAAAAACAAACGGGCGACAGTCAGTG
GCTGGCCCAGTGATCACGGG

Product: methanol dehydrogenase, large subunit

Products: aldehyde; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL
VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW
SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS
SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD
GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE
DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG
IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN

Sequences:

>Translated_600_residues
MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL
VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW
SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS
SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD
GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE
DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG
IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN
>Mature_600_residues
MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL
VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW
SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS
SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD
GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE
DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG
IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN

Specific function: Gdh Is Probably Involved In Energy Conservation Rather Than In Sugar Metabolism. [C]

COG id: COG4993

COG function: function code G; Glucose dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786316, Length=399, Percent_Identity=26.0651629072682, Blast_Score=105, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019556
- InterPro:   IPR019551
- InterPro:   IPR018391
- InterPro:   IPR017512
- InterPro:   IPR002372
- InterPro:   IPR011047
- InterPro:   IPR001479 [H]

Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]

EC number: 1.1.99.8

Molecular weight: Translated: 65342; Mature: 65342

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGD
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC
LQVAWTFSTGVLRGHEGSPLVIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVI
EEEEEEEECCEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEE
PVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEWSVVNGDPAIGETNTATVLPV
EEEEHHHHHCCEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEE
KDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS
CCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDI
CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECH
DTGVARWLYQMTPHDEWDYDGVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
VAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGEDVNSTGICPAALGTKDQQPA
EEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCC
AYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
CCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEECCC
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMT
CEEEEECCCCCCHHCCCHHCCCCEEEEEEECCEEEEEECCCCCHHEEEECCCCCCCCEEE
YEHDGRQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN
EECCCCEEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGD
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC
LQVAWTFSTGVLRGHEGSPLVIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVI
EEEEEEEECCEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEE
PVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEWSVVNGDPAIGETNTATVLPV
EEEEHHHHHCCEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEE
KDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS
CCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDI
CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECH
DTGVARWLYQMTPHDEWDYDGVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
VAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGEDVNSTGICPAALGTKDQQPA
EEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCC
AYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN
CCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEECCC
GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMT
CEEEEECCCCCCHHCCCHHCCCCEEEEEEECCEEEEEECCCCCHHEEEECCCCCCCCEEE
YEHDGRQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN
EECCCCEEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: primary alcohol; acceptor

Specific reaction: a primary alcohol + acceptor = an aldehyde + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1657873 [H]