| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108563826
Identifier: 108563826
GI number: 108563826
Start: 1458099
End: 1458425
Strand: Reverse
Name: 108563826
Synonym: HPAG1_1401
Alternate gene names: NA
Gene position: 1458425-1458099 (Counterclockwise)
Preceding gene: 108563827
Following gene: 108563825
Centisome position: 91.36
GC content: 38.84
Gene sequence:
>327_bases ATGAAAACGATCTTTAGCCTCTTTTTCCTTCTTATTGTTTTAAAAGCGCACCCCATAAACCCTTTATTAGAGCCGCTATA TTTCCCCAGTTACGCGCAATTTTTAAATTTAGAACCTCATTTTGTCATTAAAAAAAAGCACGCTTATAGGCCTTTTCAAT GGGGGAATACCATCATTATCAAACGCCATGACTTAGAAGAACGCCAAAGCAACCAGCCAAGCGATATTTTCCGCCAAAAC GCTGAAATCAATGTGTCTTTTCAAACTTTTTTAAGAGGAATAAGCAGCGCTTCTTCACGCATAGTGATCGATTCGGTCGC TCAGTAA
Upstream 100 bases:
>100_bases TTAAAAACGCGCTATAGTGGAATCTCTGAGCTTTATTTGAAAATCAGCAAGTTAGAAATTTCTCCCAATTCTCAAGTGGG AGCGAGCGTGAAAATCTGCT
Downstream 100 bases:
>100_bases AATGCTAAAACTTTTTTAATCACATTTTTCTTGGTATTTTCTTAATCCTAAAACAAATTTAAGGTATTATTAAATAGAAT AATGTAATAATAACTTTAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MKTIFSLFFLLIVLKAHPINPLLEPLYFPSYAQFLNLEPHFVIKKKHAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSFQTFLRGISSASSRIVIDSVAQ
Sequences:
>Translated_108_residues MKTIFSLFFLLIVLKAHPINPLLEPLYFPSYAQFLNLEPHFVIKKKHAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSFQTFLRGISSASSRIVIDSVAQ >Mature_108_residues MKTIFSLFFLLIVLKAHPINPLLEPLYFPSYAQFLNLEPHFVIKKKHAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSFQTFLRGISSASSRIVIDSVAQ
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12617; Mature: 12617
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIFSLFFLLIVLKAHPINPLLEPLYFPSYAQFLNLEPHFVIKKKHAYRPFQWGNTIII CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCCCEEEE KRHDLEERQSNQPSDIFRQNAEINVSFQTFLRGISSASSRIVIDSVAQ ECCCCHHHHCCCCHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEECCCC >Mature Secondary Structure MKTIFSLFFLLIVLKAHPINPLLEPLYFPSYAQFLNLEPHFVIKKKHAYRPFQWGNTIII CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCCCEEEE KRHDLEERQSNQPSDIFRQNAEINVSFQTFLRGISSASSRIVIDSVAQ ECCCCHHHHCCCCHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA