| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is bhuA [H]
Identifier: 108563825
GI number: 108563825
Start: 1455355
End: 1457946
Strand: Reverse
Name: bhuA [H]
Synonym: HPAG1_1400
Alternate gene names: 108563825
Gene position: 1457946-1455355 (Counterclockwise)
Preceding gene: 108563826
Following gene: 108563824
Centisome position: 91.33
GC content: 44.91
Gene sequence:
>2592_bases ATGCTTAGAAATAAATTCCGTATCGTGTTTGTCTCTTGTATTGTCGCTAGCAGTTTGCAAGCTCAAGAAACAACCCACAC TTTGGGTAAGGTAACCACTAAGGGTGAAAGGACTTTTGAATACAACAATAAAATGTATATTGAAAGGAAAGAGCTCCAAC AACGCCAAAGCAACCAAATCCGTGATATTTTTAGGACCAGAGCGGATGTGAATGTGGCTAGTGGGGGCTTGATGGCACAA AAGATCTATGTTAGGGGGATTGAAAGTCGCCTCTTAAGGGTAACAATAGATGGCGTCGCCCAAAATGGTAACATTTTCCA CCATGACGCTAACACCGTGATCGATCCTAACATGATTAAAGAAGTGGAAGTGATCAAAGGGGCAGCGAACGCTTCAGCGG GTCCGGGCGCGGTGGCAGGTAAATTGTCTTTCACTACGATTGACGCTAACGACTTCTTAAGAAAGAATCAAACTTATGGG GCTAAAGCGGAAGCGGGCTTTTATACCAATTTCGGGTATCGCATGAACGCTACTGCAGCCTATCGTGGTAAAAACTGGGA CATACTCGCTTATTACAACCATCAAAATATCTTTTATTATAGAGACGGAAACAACGCTTTTAGGAATCTCTTCCACCCCA ACTACGATTTACAAGATCCGAGTAATAGCGACATTGGCGTAGGGACTCCGAGCGAAATCAATAGCGTTTTAGGTAAGGTC AATGGCTATATCAACGACACGGATACCATTAGCTTAAGCTATAACATGACAAGGGAAAATTCCACTAGGCTTTTACGCCC TAACACCACTTCAGCGCTCTCTAAAGCTAACGACCCAGGAAGCCAGCCAGCCCCCTTTGTGATTGACTTTGGGAAAGAAT TAGCCCATACGATCAACTTCAACCACAATTTGAGTCTGAAATACAAGCATGATGGAGGCACTAGTTTTAGTCAGCCGCGC GTTGAATCCACCGCCTTTTTAGGGGTAAGGGGGGGCGATTATAACCCTGTGGTGAATCCTTTCGCTTACAATTCTAATGA GCCGGCTAACCCGGATTACATCCCTGAAGTTAAGGATTGGTGTAATAACCCGGATAATATCAGCCAGTGCACGCAAGGGG CTATTAGGCCTTCTGATGGGGGCTATCAAATAGGTTATGGGCAGCCGGGTTCGATCAATTGGCAAGGTGCTTCTGCAATT TCCACAGGATCTAATATTTACCATGGGCTTGTTCCTAAAAATCCTGATTATGACATGACCCCCCCTAACGCTCAAAACCC TAGCGCAAACGATTGGACTTTAGGGAATGCGGACGCTGAGGGGACTTTAGCCAGAAGGATTTTCTTAATCAACTCGGGCG TTAATTTTAAAGTAACCCACCCCATTAGCGAAGATTATGGGAATGTGTTTGAATACGGCATGATTTATCAAAACCTGAGC GTTTTCTCTGGATTGGATAAAGGCAAAAACGGCTATTATAAAAACAACATTGACCCTAACGACCCTAACGGGCCGGGCTT GCCTTATCGCCATTACTACACCGATCAAAGCTCTCAATACCCTCAAAATCTGAACGCGCCCAACCCACTTTATCGTAACA TGCCCCAAAATTCGCATGCGATTGGGAATATCATCGGTGGGTTTATGCAAGCGAACTACAATCTCTTGAAAAACCTCATC GTGGGTGCGGGAACTCGTTATGATATTTACACCTTGCTGGACAAAAACGGTCGCACGCATGTAACTTCTGGTTTCTCGCC TTCTGCAACCGTGCTTTATAACCCCATTGAAAGCATTGGCTTGAAAGTGAGTTATGCGTATGTAACTAAGGGGGCTTTGC CTGGCGATGGCGTTTTGATGCGCGATCCTACGGTGATTTATCAAAGGAATTTGCGCCCTGCGATCGGTCAAAATGTGGAA TTCAATGTGGATTACAACAGCAAGTATTTCAATGTGCGCGGGGCAGCGTTCTATCAGGTCATCAATAACTTCATCAACAG CTACGGGCAAGACACTTCTAAAAACGGAGGGGGTAATGCGACCGCAAAAAACATGTCAGGGAATTTACCCGAAACCATTA ATATCTATGGTTATGAAGTTTCAGGGAATGTGCAATATAAAAATTTCGTAGGGACTTTCTCGGTGGCTCGCTCTTGGCCA ACGGCTAGGGGGCATTTGTTAGCGGACACTTACGCTTTAGCTGCAACGACTGGGAATGTGTTTATCCTAAAAGCCGATTA CAATATCCACAGATGGGGGCTTACTTTAACTTGGCTCTCACGCTTTGTAACTAACATGTTCTATGAAGGTTATTCTATCT ACTACCCTCAATACGGTTTGATGAGAATCCATAAACCCGGGTATGGCGTGCATAATGTCTTTATCAACTGGACTCCGCCT TCTAAAAAATGGCAGGGTTTAAGGATTTCAGCCGTGTTTAATAACATCTTAAACAAGCAATATGTCAGCCAAGCTTCGGT GTGGCAAGCGAGTGCGGACGCTCCAGCAAGCGATATGATCCCTAAAGATAAGCGCATGGCGCTCCCTGCTCCTGGATTTA ACGCGCGTTTTGAGGTATCCTATCAATTCTAA
Upstream 100 bases:
>100_bases ACAAATTTAAGGTATTATTAAATAGAATAATGTAATAATAACTTTAGGTTTAAAACTTGACTAAATTTTTAGAAAAAAGT GAATAGAAAGGCTAAAAGAA
Downstream 100 bases:
>100_bases AATGAAAGAAATCTTAGGATTTCTTTTTGAATTTTAAACATGGAAACAAACATGAATAAGCCCTATAGAAACCGCCAAAC TCTATGGAAAAAGTTCCGCT
Product: iron-regulated outer membrane protein
Products: NA
Alternate protein names: Brucella heme uptake protein A [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MLRNKFRIVFVSCIVASSLQAQETTHTLGKVTTKGERTFEYNNKMYIERKELQQRQSNQIRDIFRTRADVNVASGGLMAQ KIYVRGIESRLLRVTIDGVAQNGNIFHHDANTVIDPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDANDFLRKNQTYG AKAEAGFYTNFGYRMNATAAYRGKNWDILAYYNHQNIFYYRDGNNAFRNLFHPNYDLQDPSNSDIGVGTPSEINSVLGKV NGYINDTDTISLSYNMTRENSTRLLRPNTTSALSKANDPGSQPAPFVIDFGKELAHTINFNHNLSLKYKHDGGTSFSQPR VESTAFLGVRGGDYNPVVNPFAYNSNEPANPDYIPEVKDWCNNPDNISQCTQGAIRPSDGGYQIGYGQPGSINWQGASAI STGSNIYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMIYQNLS VFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYYTDQSSQYPQNLNAPNPLYRNMPQNSHAIGNIIGGFMQANYNLLKNLI VGAGTRYDIYTLLDKNGRTHVTSGFSPSATVLYNPIESIGLKVSYAYVTKGALPGDGVLMRDPTVIYQRNLRPAIGQNVE FNVDYNSKYFNVRGAAFYQVINNFINSYGQDTSKNGGGNATAKNMSGNLPETINIYGYEVSGNVQYKNFVGTFSVARSWP TARGHLLADTYALAATTGNVFILKADYNIHRWGLTLTWLSRFVTNMFYEGYSIYYPQYGLMRIHKPGYGVHNVFINWTPP SKKWQGLRISAVFNNILNKQYVSQASVWQASADAPASDMIPKDKRMALPAPGFNARFEVSYQF
Sequences:
>Translated_863_residues MLRNKFRIVFVSCIVASSLQAQETTHTLGKVTTKGERTFEYNNKMYIERKELQQRQSNQIRDIFRTRADVNVASGGLMAQ KIYVRGIESRLLRVTIDGVAQNGNIFHHDANTVIDPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDANDFLRKNQTYG AKAEAGFYTNFGYRMNATAAYRGKNWDILAYYNHQNIFYYRDGNNAFRNLFHPNYDLQDPSNSDIGVGTPSEINSVLGKV NGYINDTDTISLSYNMTRENSTRLLRPNTTSALSKANDPGSQPAPFVIDFGKELAHTINFNHNLSLKYKHDGGTSFSQPR VESTAFLGVRGGDYNPVVNPFAYNSNEPANPDYIPEVKDWCNNPDNISQCTQGAIRPSDGGYQIGYGQPGSINWQGASAI STGSNIYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMIYQNLS VFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYYTDQSSQYPQNLNAPNPLYRNMPQNSHAIGNIIGGFMQANYNLLKNLI VGAGTRYDIYTLLDKNGRTHVTSGFSPSATVLYNPIESIGLKVSYAYVTKGALPGDGVLMRDPTVIYQRNLRPAIGQNVE FNVDYNSKYFNVRGAAFYQVINNFINSYGQDTSKNGGGNATAKNMSGNLPETINIYGYEVSGNVQYKNFVGTFSVARSWP TARGHLLADTYALAATTGNVFILKADYNIHRWGLTLTWLSRFVTNMFYEGYSIYYPQYGLMRIHKPGYGVHNVFINWTPP SKKWQGLRISAVFNNILNKQYVSQASVWQASADAPASDMIPKDKRMALPAPGFNARFEVSYQF >Mature_863_residues MLRNKFRIVFVSCIVASSLQAQETTHTLGKVTTKGERTFEYNNKMYIERKELQQRQSNQIRDIFRTRADVNVASGGLMAQ KIYVRGIESRLLRVTIDGVAQNGNIFHHDANTVIDPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDANDFLRKNQTYG AKAEAGFYTNFGYRMNATAAYRGKNWDILAYYNHQNIFYYRDGNNAFRNLFHPNYDLQDPSNSDIGVGTPSEINSVLGKV NGYINDTDTISLSYNMTRENSTRLLRPNTTSALSKANDPGSQPAPFVIDFGKELAHTINFNHNLSLKYKHDGGTSFSQPR VESTAFLGVRGGDYNPVVNPFAYNSNEPANPDYIPEVKDWCNNPDNISQCTQGAIRPSDGGYQIGYGQPGSINWQGASAI STGSNIYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMIYQNLS VFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYYTDQSSQYPQNLNAPNPLYRNMPQNSHAIGNIIGGFMQANYNLLKNLI VGAGTRYDIYTLLDKNGRTHVTSGFSPSATVLYNPIESIGLKVSYAYVTKGALPGDGVLMRDPTVIYQRNLRPAIGQNVE FNVDYNSKYFNVRGAAFYQVINNFINSYGQDTSKNGGGNATAKNMSGNLPETINIYGYEVSGNVQYKNFVGTFSVARSWP TARGHLLADTYALAATTGNVFILKADYNIHRWGLTLTWLSRFVTNMFYEGYSIYYPQYGLMRIHKPGYGVHNVFINWTPP SKKWQGLRISAVFNNILNKQYVSQASVWQASADAPASDMIPKDKRMALPAPGFNARFEVSYQF
Specific function: Heme transporter playing an important role in stationary-phase iron acquisition and required for maintenance of chronic infection in mice [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95976; Mature: 95976
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRNKFRIVFVSCIVASSLQAQETTHTLGKVTTKGERTFEYNNKMYIERKELQQRQSNQI CCCCCEEEEEEEEHHHHCCHHHHHHHHHHCEECCCCEEEEECCEEEEEHHHHHHHHHHHH RDIFRTRADVNVASGGLMAQKIYVRGIESRLLRVTIDGVAQNGNIFHHDANTVIDPNMIK HHHHHHHCCCEECCCCCEEHHHHHCCCCCEEEEEEEEEEECCCCEEEECCCCEECCHHHH EVEVIKGAANASAGPGAVAGKLSFTTIDANDFLRKNQTYGAKAEAGFYTNFGYRMNATAA HHHHHHCCCCCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCCEEECCCEEECCEEE YRGKNWDILAYYNHQNIFYYRDGNNAFRNLFHPNYDLQDPSNSDIGVGTPSEINSVLGKV ECCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH NGYINDTDTISLSYNMTRENSTRLLRPNTTSALSKANDPGSQPAPFVIDFGKELAHTINF CCEECCCEEEEEEEEECCCCCCEEECCCCHHHHHCCCCCCCCCCCEEEECCHHHHHHCCC NHNLSLKYKHDGGTSFSQPRVESTAFLGVRGGDYNPVVNPFAYNSNEPANPDYIPEVKDW CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCHHHH CNNPDNISQCTQGAIRPSDGGYQIGYGQPGSINWQGASAISTGSNIYHGLVPKNPDYDMT CCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCC PPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMIYQNLS CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHH VFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYYTDQSSQYPQNLNAPNPLYRNMPQNSHA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCH IGNIIGGFMQANYNLLKNLIVGAGTRYDIYTLLDKNGRTHVTSGFSPSATVLYNPIESIG HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCEEEECCHHHHC LKVSYAYVTKGALPGDGVLMRDPTVIYQRNLRPAIGQNVEFNVDYNSKYFNVRGAAFYQV EEEEEEEEECCCCCCCCEEEECCEEEEECCCCHHHCCCEEEEEECCCEEEEECHHHHHHH INNFINSYGQDTSKNGGGNATAKNMSGNLPETINIYGYEVSGNVQYKNFVGTFSVARSWP HHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEECCEEEEEEEEEHHHHHCCC TARGHLLADTYALAATTGNVFILKADYNIHRWGLTLTWLSRFVTNMFYEGYSIYYPQYGL CCCCCEEEEEEEEEEECCCEEEEEECCCEEEECCHHHHHHHHHHHHHHCCEEEEECCCCE MRIHKPGYGVHNVFINWTPPSKKWQGLRISAVFNNILNKQYVSQASVWQASADAPASDMI EEEECCCCCEEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCC PKDKRMALPAPGFNARFEVSYQF CCCCCEECCCCCCCCEEEEEECC >Mature Secondary Structure MLRNKFRIVFVSCIVASSLQAQETTHTLGKVTTKGERTFEYNNKMYIERKELQQRQSNQI CCCCCEEEEEEEEHHHHCCHHHHHHHHHHCEECCCCEEEEECCEEEEEHHHHHHHHHHHH RDIFRTRADVNVASGGLMAQKIYVRGIESRLLRVTIDGVAQNGNIFHHDANTVIDPNMIK HHHHHHHCCCEECCCCCEEHHHHHCCCCCEEEEEEEEEEECCCCEEEECCCCEECCHHHH EVEVIKGAANASAGPGAVAGKLSFTTIDANDFLRKNQTYGAKAEAGFYTNFGYRMNATAA HHHHHHCCCCCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCCEEECCCEEECCEEE YRGKNWDILAYYNHQNIFYYRDGNNAFRNLFHPNYDLQDPSNSDIGVGTPSEINSVLGKV ECCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH NGYINDTDTISLSYNMTRENSTRLLRPNTTSALSKANDPGSQPAPFVIDFGKELAHTINF CCEECCCEEEEEEEEECCCCCCEEECCCCHHHHHCCCCCCCCCCCEEEECCHHHHHHCCC NHNLSLKYKHDGGTSFSQPRVESTAFLGVRGGDYNPVVNPFAYNSNEPANPDYIPEVKDW CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCHHHH CNNPDNISQCTQGAIRPSDGGYQIGYGQPGSINWQGASAISTGSNIYHGLVPKNPDYDMT CCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCC PPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMIYQNLS CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHH VFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYYTDQSSQYPQNLNAPNPLYRNMPQNSHA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCH IGNIIGGFMQANYNLLKNLIVGAGTRYDIYTLLDKNGRTHVTSGFSPSATVLYNPIESIG HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCEEEECCHHHHC LKVSYAYVTKGALPGDGVLMRDPTVIYQRNLRPAIGQNVEFNVDYNSKYFNVRGAAFYQV EEEEEEEEECCCCCCCCEEEECCEEEEECCCCHHHCCCEEEEEECCCEEEEECHHHHHHH INNFINSYGQDTSKNGGGNATAKNMSGNLPETINIYGYEVSGNVQYKNFVGTFSVARSWP HHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEECCEEEEEEEEEHHHHHCCC TARGHLLADTYALAATTGNVFILKADYNIHRWGLTLTWLSRFVTNMFYEGYSIYYPQYGL CCCCCEEEEEEEEEEECCCEEEEEECCCEEEECCHHHHHHHHHHHHHHCCEEEEECCCCE MRIHKPGYGVHNVFINWTPPSKKWQGLRISAVFNNILNKQYVSQASVWQASADAPASDMI EEEECCCCCEEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCC PKDKRMALPAPGFNARFEVSYQF CCCCCEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA