Definition Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Accession NC_008060
Length 3,294,563

Click here to switch to the map view.

The map label for this gene is 107023042

Identifier: 107023042

GI number: 107023042

Start: 1654508

End: 1655245

Strand: Reverse

Name: 107023042

Synonym: Bcen_1490

Alternate gene names: NA

Gene position: 1655245-1654508 (Counterclockwise)

Preceding gene: 107023043

Following gene: 107023039

Centisome position: 50.24

GC content: 72.09

Gene sequence:

>738_bases
ATGCAGCCCGCGCAAGTAACGGCAGCGGGCGCGGCGGCCCCCGATCGCGTGCGCGGCGAGGACGTGTTTCTCGCCTCGAT
CGCCGGCTACGTCGACACGCTCGGCTTCGTCGCGCTGTTCGGGCTCTTTACCGCGCACGTCACCGGCAACTTCATCCTGA
TCGGCTCGGGCCTCGCCGGGGTCGGCCAGGGCCTGATGATCAAGTGGCTCGCGTTTCCGGCGTTCATCGCGGGCATCGTC
GCCGCTCGCGTGCTCGATCACCGGATGCGCGTGCGCGGGCATGGCGTGCGGGCGCGCTCGCTGTACGCACTGCAGACGAT
CCTGCTGGCCGGATTCATGCTCGCGGGCGTCGCGGCGTCGCCGATCGGCAGCGCCGATGCGCCCGCGACGATCGTCTGCG
GGCTGCTGGGCGCGGCGGCAATGGGCGTGCAGAACGCGCACGGCCGGCTGACCGCGCGCACCGTCGTCGCGAACACCGTG
ATGACCGGCAACGTCACGCAGGCGGTCATCGATGCATTCGACTGGCTGGTGCCGATCGCCGCGCCGGCCGAACGGGAAGC
CGCATGCGCGCGGCTGCGACGCACGTTGCCGCCGGTGGTCGGGTTCGCGCTCGGCGCGGGCGCCGGGGCGAGTGCCTACG
TGTACGCCGGGTTCTGGACACTGGTGTTGCCACTCGCGGCGCTGGGTTTCCTCACCTGGCGCTCCGGCCGGACCGGCGAA
CCGTCCGCGTCGCGCTGA

Upstream 100 bases:

>100_bases
TCCGCGAGCATGCGATCCCGCTCGTGCCGGCGCCGTTTCGTGCGCTCGCCGCGCAGGCCCGCGATGCGGACACCATCGAC
ACAACCGCGGAAGCCACGAC

Downstream 100 bases:

>100_bases
GCGCGGTTTCCGCGCGCGGCGTCGGCTGCGTGCGCGACCGGGGCGGCGGCGAAGCCGCGCTGCGTTTCTTCATTTCCTTC
AACGCAGATTTCGAGAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: Permease Transmembrane Protein

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV
AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV
MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE
PSASR

Sequences:

>Translated_245_residues
MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV
AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV
MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE
PSASR
>Mature_245_residues
MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV
AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV
MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE
PSASR

Specific function: Unknown

COG id: COG3619

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25113; Mature: 25113

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA