Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is mdtP [H]

Identifier: 103488590

GI number: 103488590

Start: 3263368

End: 3264795

Strand: Direct

Name: mdtP [H]

Synonym: Sala_3114

Alternate gene names: 103488590

Gene position: 3263368-3264795 (Clockwise)

Preceding gene: 103488588

Following gene: 103488591

Centisome position: 97.55

GC content: 71.64

Gene sequence:

>1428_bases
ATGCCTCGATTCATTTTTGTTACAACTGCGGTTCTTGGCCTGTTGGCGGGTTGCGCGAGCGTTCCCGACCTCGGCCCCAG
GCCCGTTGAGGCGGCGCCGGGGTCGCTGGTGTCAAGCGCGTCGCTCGCTGCGGCGCCCGGCGCGTGGCCGGTGGAGGGCT
GGTGGCAAGGCTTCGGCGACACGCAGCTCGATCGCCTGATCGCCGAGGGGCTGGCGGGATCGCCCGACGTCGCGATTGCC
GCGGCGCGCGTGCGCGCGGCGGAGGCTCTGGCGCAGCAGGCGGGCGCTGCGCTGCTGCCGCGCGTCGGCGCCGAAGCGGG
CGCGGGCGGCGTCCAGCAGAGCCGCAACATGGGAATCCCGCCGCAGTTCGTCCCCGACGGGGTGCGGGACACGGGACATG
TCGCCGCGACTTTCGGCTTTGATCTCGACCTGTGGGGGCGCAATCGCGCCGCGCTTGCCGCCGCGACCTCCGAAGCTGAG
GCAGCGCGCGTTGATGCGGCACAGGCGCGGCTGATGCTCGCGACGGGAATCGCCGCGGCCTATGCCGATCTGGCCGGCTA
TTATGACGCGCTCGACGTCGCCAGCGAGGCGGTGCGCGTGCGTAGCGCGACCGCGCGTCTCGCCGCCGACCGCGCGCGCG
CGGGACTCGAAAATCAGGCGAACCAGCGTCAGGCCGAAAGCCGCGCGGCGTCGGCAACGGCGGACGTCGTCGCGCTCGAA
GAAGCGATCGCGGCGACGCGCCACCGCATCGCGGCGCTCGTCGGCGCCGGCCCCGACCGCGGTTTGTCGATCACGCGCCC
GCAGATGAGGCGGCCGACGCTGGGCCTCCCCGAAAATGCCGGGATCGACCTGATCGGCCGCCGCCCCGACATCGTCGCGG
CGCGGCTGCGCAGCGAGGCGGCCGCGAAGCGTATCGACGTCGCCCGCGCCGACTTTTACCCGAATATCAGCCTGTCGGCG
CTCGTCGGGCTCCAATCGCTCGGCCTCTCCAACCTGTTCGACGCGGGCTCCGAATATGGCAGCGGCGGCGCGGCGATCAG
TTTGCCGATCTTTGAAGGCGGGCGGCTTTCGGGGCGTTATCGCGGCGCCCGCGCCGACTATGACGGCGCCATCGCCGCCT
ATGACCGCACGCTGATCGACGCGCTGCGCGACGTCGCCGATATTGTGGCGAGCCGCGCCGCGACCGAGCGCCAGCTCGCC
GGGCGCCGGGCGGCGCTCGAGGCCGCTGCCGAAGCCTCTAAACTCGCCAATCTGCGCTATCGCGCCGGCCTTGCCAACCA
GATCGAACAGCTGACGGCCGAAGATTCGATGATCGCGCTGAACCGCGCCGTGACCGATCTCGAAGCGCGCCAGCTGGCGC
TCGACATCGCGCTGATCCGGGCGCTCGGCGGCGGATACCAGGCGCCCGACCCGACAGGAGACGAATGA

Upstream 100 bases:

>100_bases
GCGTCGTCGATAGCAGGCGTACTGTCTGGTATCATTTCGATTGACAATGCTTCCTCCGCAGTTCATCTGCGCATGATACC
AGCTAGTATCGTTGGAAGCC

Downstream 100 bases:

>100_bases
TGGCCGATGAAACGGCGGCTGCCGACATCGACGCGCTGGAAACATATGGCGCGAAACGCCGGAAGCTGCTCCGCATCCTT
GCGCTCGTCGTGCTGGCCGC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIA
AARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAE
AARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE
EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSA
LVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLA
GRRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE

Sequences:

>Translated_475_residues
MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIA
AARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAE
AARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE
EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSA
LVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLA
GRRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE
>Mature_474_residues
PRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIAA
ARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEA
ARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALEE
AIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSAL
VGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAG
RRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE

Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI2367348, Length=480, Percent_Identity=31.0416666666667, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786785, Length=460, Percent_Identity=27.3913043478261, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 49069; Mature: 48938

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGD
CCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCHHHHCCCCH
TQLDRLIAEGLAGSPDVAIAAARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCC
PQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEAARVDAAQARLMLATGIAAA
CCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
YADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH
AAKRIDVARADFYPNISLSALVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRY
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC
RGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAGRRAALEAAAEASKLANLRY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGD
CCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCHHHHCCCCH
TQLDRLIAEGLAGSPDVAIAAARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCC
PQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEAARVDAAQARLMLATGIAAA
CCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
YADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH
AAKRIDVARADFYPNISLSALVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRY
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC
RGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAGRRAALEAAAEASKLANLRY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]