| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488065
Identifier: 103488065
GI number: 103488065
Start: 2729875
End: 2730453
Strand: Direct
Name: 103488065
Synonym: Sala_2587
Alternate gene names: NA
Gene position: 2729875-2730453 (Clockwise)
Preceding gene: 103488064
Following gene: 103488066
Centisome position: 81.61
GC content: 61.83
Gene sequence:
>579_bases TTGGTCCCCGCAAGCCATCTGCGGGAGAAAGGCACCCGCAAGACGGTGCCAGCTTCCCTTGCGGCGCGGGCCACGCCGTG GGCGCGCGCCCCCGCGCCCACGGCGACACTCTGGCACAAGAGGTTTGTCATCGCCAACGCTCTCGAATGCATGGAAGGAA GGGTTATGGCTTTCTGCTTGAAGCGCGATGGTTTGTCCCACCGCATCGCCCCGTCACGCCGCTTTGCCACCCTTCTGGTG GCAATTCCCTTTGCCGGCGTTCTGGTCGGGTGTTCCGGGCCCGAACGAGCCGAGAACTCCGAGGCAACCACGAACACGAA TGTCTCTGTCCAAATGCCGCCCGCCATTGTGGCAAGCCACACATACAGATGCGTTGGCGGGGACGTCCTCTATGTCGACT TCCTGGCGGACGAGACATCCATCATTGTCAGGCGTGCGCCTTCTGGCCCTTCGCTCCGATTGACGGCGCCGGCGCAAGGT CTCGCCTATGTGGGCGAGCGTATGAATCTCACACTCGATGGCAAGGACATCAAATTGGATGAGCCTAAGAAGCCTTCCCA AGCATGCAAGCGCGCCTGA
Upstream 100 bases:
>100_bases CGACCGGCTGTTTCAGCGGCACCTCACGCCTGCGCGGCCTCCCTTGCCCAAGAAACGTCCGAGGAAGGGATTTCGGCCTA ATGCCTGACGGTCCGCAAGT
Downstream 100 bases:
>100_bases AGCGGACGTCTGGTGTCGACCTGCGCGGGATCCTGATTATGGCCATATCCATGTCGAGGCCTGTTCGGGCGGCATGCCCG TGGCTCTGGCAGATGCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MVPASHLREKGTRKTVPASLAARATPWARAPAPTATLWHKRFVIANALECMEGRVMAFCLKRDGLSHRIAPSRRFATLLV AIPFAGVLVGCSGPERAENSEATTNTNVSVQMPPAIVASHTYRCVGGDVLYVDFLADETSIIVRRAPSGPSLRLTAPAQG LAYVGERMNLTLDGKDIKLDEPKKPSQACKRA
Sequences:
>Translated_192_residues MVPASHLREKGTRKTVPASLAARATPWARAPAPTATLWHKRFVIANALECMEGRVMAFCLKRDGLSHRIAPSRRFATLLV AIPFAGVLVGCSGPERAENSEATTNTNVSVQMPPAIVASHTYRCVGGDVLYVDFLADETSIIVRRAPSGPSLRLTAPAQG LAYVGERMNLTLDGKDIKLDEPKKPSQACKRA >Mature_192_residues MVPASHLREKGTRKTVPASLAARATPWARAPAPTATLWHKRFVIANALECMEGRVMAFCLKRDGLSHRIAPSRRFATLLV AIPFAGVLVGCSGPERAENSEATTNTNVSVQMPPAIVASHTYRCVGGDVLYVDFLADETSIIVRRAPSGPSLRLTAPAQG LAYVGERMNLTLDGKDIKLDEPKKPSQACKRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20690; Mature: 20690
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVPASHLREKGTRKTVPASLAARATPWARAPAPTATLWHKRFVIANALECMEGRVMAFCL CCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE KRDGLSHRIAPSRRFATLLVAIPFAGVLVGCSGPERAENSEATTNTNVSVQMPPAIVASH CCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHCC TYRCVGGDVLYVDFLADETSIIVRRAPSGPSLRLTAPAQGLAYVGERMNLTLDGKDIKLD CEEEECCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCCHHHHCCCEEEEECCCEEECC EPKKPSQACKRA CCCCHHHHHHCC >Mature Secondary Structure MVPASHLREKGTRKTVPASLAARATPWARAPAPTATLWHKRFVIANALECMEGRVMAFCL CCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE KRDGLSHRIAPSRRFATLLVAIPFAGVLVGCSGPERAENSEATTNTNVSVQMPPAIVASH CCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHCC TYRCVGGDVLYVDFLADETSIIVRRAPSGPSLRLTAPAQGLAYVGERMNLTLDGKDIKLD CEEEECCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCCHHHHCCCEEEEECCCEEECC EPKKPSQACKRA CCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA