| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488064
Identifier: 103488064
GI number: 103488064
Start: 2729377
End: 2729862
Strand: Direct
Name: 103488064
Synonym: Sala_2586
Alternate gene names: NA
Gene position: 2729377-2729862 (Clockwise)
Preceding gene: 103488063
Following gene: 103488065
Centisome position: 81.59
GC content: 59.26
Gene sequence:
>486_bases ATGAGCATGTTTCTCGAAGAGAATGACACGATCCTGCATGCCGCACCGCCGAAGGTCTGGGCCGCGCTCACCCGTTTTGA CGCCTATGAACGGTGGAATCCCTTCGTCCGGATCTCCGGCCCGCTCGAGCAGGGCGCCCTCGTCGCCTATTCCTTCAGAA TGAAATCGAACAAGCCGCGGTTTTTTACCATTGATGCCCGCATCACAGCGCTAGAGCCCCAAAGGTGTGTGACCTTCCGC TTCGGATTTGGCGGACTGATGTCGTTCGAGGAGAGCTATTGCGTTGAGCCCGTCCCCGTCGGATCGCGAATGGTTCACAG CTTTCGTTGCACCGGCCTGCTCTCCGGGCTGAAGCTGAGGCGGATGCGGCAAAACTTCAGCAAGATGCTCGAGATCACCG ACCGGCTGTTTCAGCGGCACCTCACGCCTGCGCGGCCTCCCTTGCCCAAGAAACGTCCGAGGAAGGGATTTCGGCCTAAT GCCTGA
Upstream 100 bases:
>100_bases TCACCGTTCGGGCCACCATGGATACAAGCGCAGGCGCGGCTTTCTTTCGGACCTGTTCGACTGATCAGACGTGAACCGCC GCACGACGGCGGGACGGGGA
Downstream 100 bases:
>100_bases CGGTCCGCAAGTTTGGTCCCCGCAAGCCATCTGCGGGAGAAAGGCACCCGCAAGACGGTGCCAGCTTCCCTTGCGGCGCG GGCCACGCCGTGGGCGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MSMFLEENDTILHAAPPKVWAALTRFDAYERWNPFVRISGPLEQGALVAYSFRMKSNKPRFFTIDARITALEPQRCVTFR FGFGGLMSFEESYCVEPVPVGSRMVHSFRCTGLLSGLKLRRMRQNFSKMLEITDRLFQRHLTPARPPLPKKRPRKGFRPN A
Sequences:
>Translated_161_residues MSMFLEENDTILHAAPPKVWAALTRFDAYERWNPFVRISGPLEQGALVAYSFRMKSNKPRFFTIDARITALEPQRCVTFR FGFGGLMSFEESYCVEPVPVGSRMVHSFRCTGLLSGLKLRRMRQNFSKMLEITDRLFQRHLTPARPPLPKKRPRKGFRPN A >Mature_160_residues SMFLEENDTILHAAPPKVWAALTRFDAYERWNPFVRISGPLEQGALVAYSFRMKSNKPRFFTIDARITALEPQRCVTFRF GFGGLMSFEESYCVEPVPVGSRMVHSFRCTGLLSGLKLRRMRQNFSKMLEITDRLFQRHLTPARPPLPKKRPRKGFRPNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18669; Mature: 18538
Theoretical pI: Translated: 11.30; Mature: 11.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMFLEENDTILHAAPPKVWAALTRFDAYERWNPFVRISGPLEQGALVAYSFRMKSNKPR CCCEECCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCC FFTIDARITALEPQRCVTFRFGFGGLMSFEESYCVEPVPVGSRMVHSFRCTGLLSGLKLR EEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RMRQNFSKMLEITDRLFQRHLTPARPPLPKKRPRKGFRPNA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SMFLEENDTILHAAPPKVWAALTRFDAYERWNPFVRISGPLEQGALVAYSFRMKSNKPR CCEECCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCC FFTIDARITALEPQRCVTFRFGFGGLMSFEESYCVEPVPVGSRMVHSFRCTGLLSGLKLR EEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RMRQNFSKMLEITDRLFQRHLTPARPPLPKKRPRKGFRPNA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA