| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is prs [H]
Identifier: 103487951
GI number: 103487951
Start: 2611327
End: 2612226
Strand: Reverse
Name: prs [H]
Synonym: Sala_2472
Alternate gene names: 103487951
Gene position: 2612226-2611327 (Counterclockwise)
Preceding gene: 103487952
Following gene: 103487950
Centisome position: 78.09
GC content: 64.89
Gene sequence:
>900_bases ATGACCCCGCCGATGTTCCTGCCGCTGCCCGGTAACGGCAAGTTCGCGGTTGGACTCGCGGGCCTGCTCGGGGGCGAGGT CGGACGGATCGAAACCCGCAGATTTCCGGACGGTGAGACCTATCTGCGGCTCCTTTCCGAGGTTGCCGGCCGCGACATCG TGCTCGTCTGCACGCTGGATCGCCCCGATACCAAGCTGGTTTCGCTTCTTATCGCAGCCGACGCGGCCCGCGAGCTCGGC GCCTTCAGCGTAGGGCTCGTAGCCCCATATCTTGCCTATATGCGCCAGGACCGGCGCTTTCAGAATGGCGAGGCAATCAG CTCGCGCAGTTTCGCGCGCCGCATTTCGGGCGCCGTCGACTGGCTGGTCACGGCGGATCCCCATCTTCATCGATATGCCT CGCTCGGCGACATCTATGATATTCGGGCCGAGGCCGTGCATGCCGCAGCGCCGATTTCCGACTGGATCAGAACCCATGTC GAGCGGCCGCTCATCATCGGTCCCGACAGCGAAAGCGAACAATGGGCGAGCGCGATCGCACGCCGCGCCGGTGCCCCTCA CGCCGTTTGCAGCAAGCTGAGATTGGGCGATCGCGACGTCAGGATCGCGCTACCCGATCTCTCGGCGCATACAGGGCGCA CCCCGGTTCTGGTCGACGATATCGCGTCATCGGCCCGCACGCTGATCGAAGCGGCGCGGGGAATAGGAGAGGCTGGTTTT CCGCCGCCCGAATGCGTCATCGTGCATCCGTTATTCGCTCGCGGCGCCTTCGCGGCACTGTCCGCCGAGGCGGGGCGTAT CGTCAGTACCGATGCTGTCGCTCATTCCAGCAACGCCATCAGCCTGCAGCCGGTCGTCGCGGAAGGCGTGCAGCGCCTCC TCGCTAAACCCGATCGATAA
Upstream 100 bases:
>100_bases GAACGCCCCTCCTCACAGTGCACGCCGAAAGCCAGGGCGAACTGGCCTATGCGCTGGCCTATGCCGAGGCCGTTGGCCCC ATTCTCGAGCTATCCGACCG
Downstream 100 bases:
>100_bases AGCGGCCGATATCTAGGTATTTTCCGAAGTTGCGAACACTACGTATGTCGAGCTTGGACTCTGGACCCTAGTCCTGTTGC CGAAGAACAGGATTCTTCGA
Product: phosphoribosylpyrophosphate synthetase
Products: NA
Alternate protein names: RPPK; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase [H]
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MTPPMFLPLPGNGKFAVGLAGLLGGEVGRIETRRFPDGETYLRLLSEVAGRDIVLVCTLDRPDTKLVSLLIAADAARELG AFSVGLVAPYLAYMRQDRRFQNGEAISSRSFARRISGAVDWLVTADPHLHRYASLGDIYDIRAEAVHAAAPISDWIRTHV ERPLIIGPDSESEQWASAIARRAGAPHAVCSKLRLGDRDVRIALPDLSAHTGRTPVLVDDIASSARTLIEAARGIGEAGF PPPECVIVHPLFARGAFAALSAEAGRIVSTDAVAHSSNAISLQPVVAEGVQRLLAKPDR
Sequences:
>Translated_299_residues MTPPMFLPLPGNGKFAVGLAGLLGGEVGRIETRRFPDGETYLRLLSEVAGRDIVLVCTLDRPDTKLVSLLIAADAARELG AFSVGLVAPYLAYMRQDRRFQNGEAISSRSFARRISGAVDWLVTADPHLHRYASLGDIYDIRAEAVHAAAPISDWIRTHV ERPLIIGPDSESEQWASAIARRAGAPHAVCSKLRLGDRDVRIALPDLSAHTGRTPVLVDDIASSARTLIEAARGIGEAGF PPPECVIVHPLFARGAFAALSAEAGRIVSTDAVAHSSNAISLQPVVAEGVQRLLAKPDR >Mature_298_residues TPPMFLPLPGNGKFAVGLAGLLGGEVGRIETRRFPDGETYLRLLSEVAGRDIVLVCTLDRPDTKLVSLLIAADAARELGA FSVGLVAPYLAYMRQDRRFQNGEAISSRSFARRISGAVDWLVTADPHLHRYASLGDIYDIRAEAVHAAAPISDWIRTHVE RPLIIGPDSESEQWASAIARRAGAPHAVCSKLRLGDRDVRIALPDLSAHTGRTPVLVDDIASSARTLIEAARGIGEAGFP PPECVIVHPLFARGAFAALSAEAGRIVSTDAVAHSSNAISLQPVVAEGVQRLLAKPDR
Specific function: Utilized by both the de novo and the salvage pathways by which endogenously formed or exogenously added pyrimidine, purine, or pyridine bases are converted to the corresponding ribonucleoside monophosphates. [C]
COG id: COG0462
COG function: function code FE; Phosphoribosylpyrophosphate synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose-phosphate pyrophosphokinase family [H]
Homologues:
Organism=Homo sapiens, GI84875539, Length=292, Percent_Identity=26.027397260274, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI4506127, Length=289, Percent_Identity=26.643598615917, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4506129, Length=289, Percent_Identity=25.6055363321799, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI28557709, Length=290, Percent_Identity=25.5172413793103, Blast_Score=87, Evalue=3e-17, Organism=Escherichia coli, GI1787458, Length=307, Percent_Identity=26.3843648208469, Blast_Score=81, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25149168, Length=281, Percent_Identity=24.1992882562278, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17554702, Length=284, Percent_Identity=24.2957746478873, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17554704, Length=281, Percent_Identity=24.1992882562278, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71989924, Length=284, Percent_Identity=24.2957746478873, Blast_Score=77, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6319403, Length=302, Percent_Identity=22.8476821192053, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6321776, Length=295, Percent_Identity=23.728813559322, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6320946, Length=293, Percent_Identity=21.8430034129693, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355239, Length=246, Percent_Identity=25.609756097561, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI45551540, Length=269, Percent_Identity=23.7918215613383, Blast_Score=73, Evalue=2e-13,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005946 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.7.6.1 [H]
Molecular weight: Translated: 31984; Mature: 31853
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPMFLPLPGNGKFAVGLAGLLGGEVGRIETRRFPDGETYLRLLSEVAGRDIVLVCTLD CCCCCEEECCCCCCEEEEHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEECC RPDTKLVSLLIAADAARELGAFSVGLVAPYLAYMRQDRRFQNGEAISSRSFARRISGAVD CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHE WLVTADPHLHRYASLGDIYDIRAEAVHAAAPISDWIRTHVERPLIIGPDSESEQWASAIA EEEECCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCHHHHHHHHH RRAGAPHAVCSKLRLGDRDVRIALPDLSAHTGRTPVLVDDIASSARTLIEAARGIGEAGF HHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC PPPECVIVHPLFARGAFAALSAEAGRIVSTDAVAHSSNAISLQPVVAEGVQRLLAKPDR CCCCEEEECCHHHCCHHHHHHCCCCCEEECHHHHCCCCCEEECHHHHHHHHHHHCCCCC >Mature Secondary Structure TPPMFLPLPGNGKFAVGLAGLLGGEVGRIETRRFPDGETYLRLLSEVAGRDIVLVCTLD CCCCEEECCCCCCEEEEHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEECC RPDTKLVSLLIAADAARELGAFSVGLVAPYLAYMRQDRRFQNGEAISSRSFARRISGAVD CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHE WLVTADPHLHRYASLGDIYDIRAEAVHAAAPISDWIRTHVERPLIIGPDSESEQWASAIA EEEECCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCHHHHHHHHH RRAGAPHAVCSKLRLGDRDVRIALPDLSAHTGRTPVLVDDIASSARTLIEAARGIGEAGF HHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC PPPECVIVHPLFARGAFAALSAEAGRIVSTDAVAHSSNAISLQPVVAEGVQRLLAKPDR CCCCEEEECCHHHCCHHHHHHCCCCCEEECHHHHCCCCCEEECHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11930014 [H]