Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487942

Identifier: 103487942

GI number: 103487942

Start: 2604787

End: 2605236

Strand: Reverse

Name: 103487942

Synonym: Sala_2463

Alternate gene names: NA

Gene position: 2605236-2604787 (Counterclockwise)

Preceding gene: 103487943

Following gene: 103487941

Centisome position: 77.88

GC content: 60.89

Gene sequence:

>450_bases
ATGTGGGCTTCACGTATTTCGATCCGGACGTTCGGTGCAGCATATCGAGCACAGCGGCGCCGATCCGACTTGGTGTCGAT
ACAAAGCAAAGATTTCGAATGGAGACACATCATGCGCAAGATTTCCCCTGTTCTGACGGTCCTTGGCCTCCTCGCCCTGA
CCCAGATGCCGGTCCTCGCCGACGAGAGCAAAGGGCCGCCGAAGAAGCCGGCCGCCACCGCGCCGGCCCAGAAGCCCGGC
GACGAGCATCGCCACGGCATGGACCACGGCGGACAGCAGATGCACGACAAGATGATGAAAGATCACCGCGAGGGCATGGA
AAAGATGCAGGATCAGTCCGGCGGTGGATGCGGCGGCAACGACAAGCCCATGCCTGCCATGGGCGGCATGGGGACGTCCA
AGCCTGCGGACAAACCGAAAGACATGCCGATGAAGCACGAGCATATGTGA

Upstream 100 bases:

>100_bases
GCGCGAACTTATGCCGCCGCTGTGCCGAGGGGTGCGGCATGATGGTCATGTCTTCATAGCAGCACGTGGCGTTCCGATTT
TCTTCGGGCGAGAGATCAAC

Downstream 100 bases:

>100_bases
GCATCGGTCGGTCCATCCCCCCGGAAGCCCGCTGCCCCCGTGGCAGCGGGCTTTTTGTCTGAAAAGCTCAAATGTTCCCG
TGAAGATTTTCGGTCCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MWASRISIRTFGAAYRAQRRRSDLVSIQSKDFEWRHIMRKISPVLTVLGLLALTQMPVLADESKGPPKKPAATAPAQKPG
DEHRHGMDHGGQQMHDKMMKDHREGMEKMQDQSGGGCGGNDKPMPAMGGMGTSKPADKPKDMPMKHEHM

Sequences:

>Translated_149_residues
MWASRISIRTFGAAYRAQRRRSDLVSIQSKDFEWRHIMRKISPVLTVLGLLALTQMPVLADESKGPPKKPAATAPAQKPG
DEHRHGMDHGGQQMHDKMMKDHREGMEKMQDQSGGGCGGNDKPMPAMGGMGTSKPADKPKDMPMKHEHM
>Mature_149_residues
MWASRISIRTFGAAYRAQRRRSDLVSIQSKDFEWRHIMRKISPVLTVLGLLALTQMPVLADESKGPPKKPAATAPAQKPG
DEHRHGMDHGGQQMHDKMMKDHREGMEKMQDQSGGGCGGNDKPMPAMGGMGTSKPADKPKDMPMKHEHM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16527; Mature: 16527

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
10.1 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
10.1 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWASRISIRTFGAAYRAQRRRSDLVSIQSKDFEWRHIMRKISPVLTVLGLLALTQMPVLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DESKGPPKKPAATAPAQKPGDEHRHGMDHGGQQMHDKMMKDHREGMEKMQDQSGGGCGGN
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DKPMPAMGGMGTSKPADKPKDMPMKHEHM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWASRISIRTFGAAYRAQRRRSDLVSIQSKDFEWRHIMRKISPVLTVLGLLALTQMPVLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DESKGPPKKPAATAPAQKPGDEHRHGMDHGGQQMHDKMMKDHREGMEKMQDQSGGGCGGN
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DKPMPAMGGMGTSKPADKPKDMPMKHEHM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA