Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487941

Identifier: 103487941

GI number: 103487941

Start: 2603481

End: 2604551

Strand: Reverse

Name: 103487941

Synonym: Sala_2462

Alternate gene names: NA

Gene position: 2604551-2603481 (Counterclockwise)

Preceding gene: 103487942

Following gene: 103487931

Centisome position: 77.86

GC content: 64.52

Gene sequence:

>1071_bases
GTGATCCCCGTTGCCGCAACCCACGATTTCCATATAGTGAGCCTTTCGGCTTCCTTTCCTCTTGCCGCTCTCGGCCTTGC
GCCCATTTGGGGGTGGTTGGCCGATCGCATGGACTATCGGGTGCTTCTTCGGATCGCGCTTCTGGTCCTCGCGGCAACGA
CACTGGCGTTCGGCAGTACCGATCTCGCCACCTTATATCTTCTGCGCATCCTGTCGGGCATGGCGTCGGGGGCCATCATT
CCTCTCTCGCTCCTTGCTGCGGGCTTCCGGGCCGAGAGCCGGGTGGGTCGGGCCCGTCTCTTCACATGGCTGACCAGCTT
TGTCTTTCTTGGCGACCTGGCCGGCCCCCTGCTCACACAATTGTCTTTTCCGCTGCTGCCGTCGGCCCCGCTGTTCCCTC
TCGCCCTGGCACTCTTGCTCGCCGGTTGCCTGCTGTCGCCCTCTCAGCTTCCCAAACGGTCTCGTTCGCATGCCATCCCG
CGCCGCAGCAACCGCGACAACAACCGGAAGACTGCGACACTCCTCGTCATCACCATTATCGCCGGCGCTGCCCTGGCGGC
CCTTCACATCGGTCTGCTGGTGACCGGCCAAGGCCTTCCGCTCGACCGCGAAGCCATCGCCTTCATGCTGAGCCTTTGCG
GCGTCGGCATGCTCGCGGCACAAATCGCGCAGGCCCGTTTGGGTTGGCTTGTCCGCCGGCCGGTCGATCTCACGCGTCTT
ATGCTGCTCGTTCTGGCAATCGGACTGTTGGCTTCGCAAAATCCGCGGTCGATCCTCGGTCTCGCGGGGATCGCTTTCCT
TCTCGGCTGGAGCGCGGCCAGCCTTCGCCTCGTGACCAGCTTCTGGATCAGCAACCGCAGCTCCCGGGTTTCGGGTGCTC
GGCTCGGGCTCCAGCATGCGGCGGCGAGTATTGGACAGGCGGCGGCGCCGATCGGGCTTGCGCTCGCGGGAGTGGGGCAG
CAGTGGGTGATCACGTTCACCCTGGCGGCGGCGGCATTGATCGTCGCTCTCAGCCTGCCTTTGCTGTGGCAAGAGGGGGA
ACGGACGAGCGATCGGTCCAGTCAGCCATGA

Upstream 100 bases:

>100_bases
AAGCTTCGGATTCTTGCTCCTCCTGATTGCCGTTGCCGCGACGTCGGCCACGCAAACGGCCGCCATCGCTTTTCTGCCGT
CCTTGATCGAGGGCGGCGCG

Downstream 100 bases:

>100_bases
TCCCTTGCGGAGCAAGCGATCGCCTCGAGCAGTGCGCGCGCGATCAGCGGCTTTGCAATGACATGCTCGAATCCAACGCG
CCTCGCTTCGCGTTCCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII
PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP
RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL
MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ
QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP

Sequences:

>Translated_356_residues
MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII
PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP
RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL
MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ
QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP
>Mature_356_residues
MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII
PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP
RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL
MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ
QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37584; Mature: 37584

Theoretical pI: Translated: 12.16; Mature: 12.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGST
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DLATLYLLRILSGMASGAIIPLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIPRRSNRDNNRKTATLLVITII
HCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
AGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL
HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AASIGQAAAPIGLALAGVGQQWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGST
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DLATLYLLRILSGMASGAIIPLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIPRRSNRDNNRKTATLLVITII
HCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
AGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL
HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AASIGQAAAPIGLALAGVGQQWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA