| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487941
Identifier: 103487941
GI number: 103487941
Start: 2603481
End: 2604551
Strand: Reverse
Name: 103487941
Synonym: Sala_2462
Alternate gene names: NA
Gene position: 2604551-2603481 (Counterclockwise)
Preceding gene: 103487942
Following gene: 103487931
Centisome position: 77.86
GC content: 64.52
Gene sequence:
>1071_bases GTGATCCCCGTTGCCGCAACCCACGATTTCCATATAGTGAGCCTTTCGGCTTCCTTTCCTCTTGCCGCTCTCGGCCTTGC GCCCATTTGGGGGTGGTTGGCCGATCGCATGGACTATCGGGTGCTTCTTCGGATCGCGCTTCTGGTCCTCGCGGCAACGA CACTGGCGTTCGGCAGTACCGATCTCGCCACCTTATATCTTCTGCGCATCCTGTCGGGCATGGCGTCGGGGGCCATCATT CCTCTCTCGCTCCTTGCTGCGGGCTTCCGGGCCGAGAGCCGGGTGGGTCGGGCCCGTCTCTTCACATGGCTGACCAGCTT TGTCTTTCTTGGCGACCTGGCCGGCCCCCTGCTCACACAATTGTCTTTTCCGCTGCTGCCGTCGGCCCCGCTGTTCCCTC TCGCCCTGGCACTCTTGCTCGCCGGTTGCCTGCTGTCGCCCTCTCAGCTTCCCAAACGGTCTCGTTCGCATGCCATCCCG CGCCGCAGCAACCGCGACAACAACCGGAAGACTGCGACACTCCTCGTCATCACCATTATCGCCGGCGCTGCCCTGGCGGC CCTTCACATCGGTCTGCTGGTGACCGGCCAAGGCCTTCCGCTCGACCGCGAAGCCATCGCCTTCATGCTGAGCCTTTGCG GCGTCGGCATGCTCGCGGCACAAATCGCGCAGGCCCGTTTGGGTTGGCTTGTCCGCCGGCCGGTCGATCTCACGCGTCTT ATGCTGCTCGTTCTGGCAATCGGACTGTTGGCTTCGCAAAATCCGCGGTCGATCCTCGGTCTCGCGGGGATCGCTTTCCT TCTCGGCTGGAGCGCGGCCAGCCTTCGCCTCGTGACCAGCTTCTGGATCAGCAACCGCAGCTCCCGGGTTTCGGGTGCTC GGCTCGGGCTCCAGCATGCGGCGGCGAGTATTGGACAGGCGGCGGCGCCGATCGGGCTTGCGCTCGCGGGAGTGGGGCAG CAGTGGGTGATCACGTTCACCCTGGCGGCGGCGGCATTGATCGTCGCTCTCAGCCTGCCTTTGCTGTGGCAAGAGGGGGA ACGGACGAGCGATCGGTCCAGTCAGCCATGA
Upstream 100 bases:
>100_bases AAGCTTCGGATTCTTGCTCCTCCTGATTGCCGTTGCCGCGACGTCGGCCACGCAAACGGCCGCCATCGCTTTTCTGCCGT CCTTGATCGAGGGCGGCGCG
Downstream 100 bases:
>100_bases TCCCTTGCGGAGCAAGCGATCGCCTCGAGCAGTGCGCGCGCGATCAGCGGCTTTGCAATGACATGCTCGAATCCAACGCG CCTCGCTTCGCGTTCCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP
Sequences:
>Translated_356_residues MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP >Mature_356_residues MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGSTDLATLYLLRILSGMASGAII PLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQLSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIP RRSNRDNNRKTATLLVITIIAGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHAAASIGQAAAPIGLALAGVGQ QWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37584; Mature: 37584
Theoretical pI: Translated: 12.16; Mature: 12.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGST CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DLATLYLLRILSGMASGAIIPLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIPRRSNRDNNRKTATLLVITII HCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH AGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH AASIGQAAAPIGLALAGVGQQWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MIPVAATHDFHIVSLSASFPLAALGLAPIWGWLADRMDYRVLLRIALLVLAATTLAFGST CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DLATLYLLRILSGMASGAIIPLSLLAAGFRAESRVGRARLFTWLTSFVFLGDLAGPLLTQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFPLLPSAPLFPLALALLLAGCLLSPSQLPKRSRSHAIPRRSNRDNNRKTATLLVITII HCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH AGAALAALHIGLLVTGQGLPLDREAIAFMLSLCGVGMLAAQIAQARLGWLVRRPVDLTRL HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH MLLVLAIGLLASQNPRSILGLAGIAFLLGWSAASLRLVTSFWISNRSSRVSGARLGLQHA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH AASIGQAAAPIGLALAGVGQQWVITFTLAAAALIVALSLPLLWQEGERTSDRSSQP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA