| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487793
Identifier: 103487793
GI number: 103487793
Start: 2439711
End: 2440970
Strand: Reverse
Name: 103487793
Synonym: Sala_2312
Alternate gene names: NA
Gene position: 2440970-2439711 (Counterclockwise)
Preceding gene: 103487796
Following gene: 103487787
Centisome position: 72.97
GC content: 65.95
Gene sequence:
>1260_bases ATGAACAAAGCCTCCTTGCTCGTCAGCCTCGCCGCGCTCGCCCTTGTTTCCAGCCCCGTCGCCGCCCAGACCTCGCCCGA GGCGGTGGCCGCGGCCGCGCTCAAGAAGGCGCCGGTGTTCGACGGGCATAATGACGTGCCCTGGGCGCTGCGCGCGCGCG TCGATAACGTCATCAATGATTTCGATTTCGTCGACACGACCGATACCGCGACCGGGGACCGGATCGCGATGCACACCGAC CTCACCCGGCTGCGCCGCGGGCATGTCGGCGCGCAATTCTGGTCGGTTTACGTTCCCTCGACCACCAACGAGGCGAAAGC GGTGCAGCAGACGATCGAGCAGATCGACGTGATGAAGCGGCTGGTCGCGCGCTATCCCGCCGACCTGATGCTCGCCGACA ATTCCGCCGAGCTGGAAAAGGCGATGAAGGCGGGCAAGGTCGCCGGGATGCTGGGGATCGAGGGCGGGCATTCGATCGGG TCGAGCCTGGCGGTGCTGCGCGAAATGTATGGCATGGGCGTACGCTATATGACGCTGACCCACGGCAGAAATGTGCCATG GGCCGACAGCGCGACCGACGCACCGGAGCATGGCGGCCTCACCGATTTCGGGCGCCAGGTGGTCCAGGAAATGAACCGCA TCGGCATGATCGTCGATCTGAGCCACGTCAGCGAGGCGACGATGAAGGATGCGCTCGCGGCGTCGAAGGCGCCGGTGATG TTCAGCCATTCGGGCGTGCGCGCGATAAACGATCATCCGCGCAATGTCCCCGACAGCGTGCTGCCCGCGGTGAAGGCCAA TGGCGGGATCGTGATGGTGGTGTTCCTGCCGGGCTTCCTCGACGCCGATGTCCGCGCGCATGGCCTCGACCGCACTGGCG TGGAGGCGCGGCTGAAGGCGATGTATCCGGGCGATCCCGCGGCGGTTGCGGCGGCGCTCACGGCGTGGGACGCTGCGAAC CCCGCCCCGAAAACGCAGATTGCCAGGGTCGCCGACCATATCGACCATCTGAAACACATGATCGGCGTCGACCATATCGG ACTCGGCGGCGACTATGACGGTATGGATTCGGCGCCCGTGGGCATGGAGGATGTCGCGGGCTATCCGGCGCTGTTCGTCG AGCTGGCGCGGCGCGGCTATTCGCAGGCCGAGCTGGAGAAGATTGCGAGCGGCAACATGCTGCGCGTGCTGAAGGCGGTC GAGGCCTTTGCCGCAAGCCAGAAGGGTCAGCCGCCGGTCGAAACGCCGGTGGCGAAATAG
Upstream 100 bases:
>100_bases GTCATGCACCGATGCTGCGCGGGGTTGACGTAAACGTCAAGGTGCCTTTCTTTCGCCCGCGCGCTTGCGCTGCGCGATCA AGCGGTTAGGGTCGCGCGCC
Downstream 100 bases:
>100_bases CCTATCGGTCCGTACCGTGCCGAAATGGCCACTCCACCGCGCCGCTTGCCCATAGCGCCCACCAGATGATGAGTGGCTGC GCGGCGAGGCGGGGGCCGTG
Product: membrane dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MNKASLLVSLAALALVSSPVAAQTSPEAVAAAALKKAPVFDGHNDVPWALRARVDNVINDFDFVDTTDTATGDRIAMHTD LTRLRRGHVGAQFWSVYVPSTTNEAKAVQQTIEQIDVMKRLVARYPADLMLADNSAELEKAMKAGKVAGMLGIEGGHSIG SSLAVLREMYGMGVRYMTLTHGRNVPWADSATDAPEHGGLTDFGRQVVQEMNRIGMIVDLSHVSEATMKDALAASKAPVM FSHSGVRAINDHPRNVPDSVLPAVKANGGIVMVVFLPGFLDADVRAHGLDRTGVEARLKAMYPGDPAAVAAALTAWDAAN PAPKTQIARVADHIDHLKHMIGVDHIGLGGDYDGMDSAPVGMEDVAGYPALFVELARRGYSQAELEKIASGNMLRVLKAV EAFAASQKGQPPVETPVAK
Sequences:
>Translated_419_residues MNKASLLVSLAALALVSSPVAAQTSPEAVAAAALKKAPVFDGHNDVPWALRARVDNVINDFDFVDTTDTATGDRIAMHTD LTRLRRGHVGAQFWSVYVPSTTNEAKAVQQTIEQIDVMKRLVARYPADLMLADNSAELEKAMKAGKVAGMLGIEGGHSIG SSLAVLREMYGMGVRYMTLTHGRNVPWADSATDAPEHGGLTDFGRQVVQEMNRIGMIVDLSHVSEATMKDALAASKAPVM FSHSGVRAINDHPRNVPDSVLPAVKANGGIVMVVFLPGFLDADVRAHGLDRTGVEARLKAMYPGDPAAVAAALTAWDAAN PAPKTQIARVADHIDHLKHMIGVDHIGLGGDYDGMDSAPVGMEDVAGYPALFVELARRGYSQAELEKIASGNMLRVLKAV EAFAASQKGQPPVETPVAK >Mature_419_residues MNKASLLVSLAALALVSSPVAAQTSPEAVAAAALKKAPVFDGHNDVPWALRARVDNVINDFDFVDTTDTATGDRIAMHTD LTRLRRGHVGAQFWSVYVPSTTNEAKAVQQTIEQIDVMKRLVARYPADLMLADNSAELEKAMKAGKVAGMLGIEGGHSIG SSLAVLREMYGMGVRYMTLTHGRNVPWADSATDAPEHGGLTDFGRQVVQEMNRIGMIVDLSHVSEATMKDALAASKAPVM FSHSGVRAINDHPRNVPDSVLPAVKANGGIVMVVFLPGFLDADVRAHGLDRTGVEARLKAMYPGDPAAVAAALTAWDAAN PAPKTQIARVADHIDHLKHMIGVDHIGLGGDYDGMDSAPVGMEDVAGYPALFVELARRGYSQAELEKIASGNMLRVLKAV EAFAASQKGQPPVETPVAK
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=393, Percent_Identity=40.2035623409669, Blast_Score=301, Evalue=7e-82, Organism=Homo sapiens, GI4758190, Length=393, Percent_Identity=40.2035623409669, Blast_Score=301, Evalue=7e-82, Organism=Homo sapiens, GI11641269, Length=390, Percent_Identity=41.025641025641, Blast_Score=296, Evalue=3e-80, Organism=Homo sapiens, GI193211608, Length=390, Percent_Identity=39.2307692307692, Blast_Score=287, Evalue=1e-77, Organism=Homo sapiens, GI193211610, Length=390, Percent_Identity=39.2307692307692, Blast_Score=282, Evalue=3e-76, Organism=Drosophila melanogaster, GI221475880, Length=420, Percent_Identity=42.3809523809524, Blast_Score=326, Evalue=2e-89, Organism=Drosophila melanogaster, GI281362638, Length=377, Percent_Identity=43.236074270557, Blast_Score=314, Evalue=7e-86, Organism=Drosophila melanogaster, GI281362636, Length=377, Percent_Identity=43.236074270557, Blast_Score=314, Evalue=7e-86, Organism=Drosophila melanogaster, GI161083233, Length=368, Percent_Identity=37.5, Blast_Score=252, Evalue=3e-67, Organism=Drosophila melanogaster, GI21356391, Length=336, Percent_Identity=30.3571428571429, Blast_Score=152, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 44508; Mature: 44508
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00869 RENAL_DIPEPTIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKASLLVSLAALALVSSPVAAQTSPEAVAAAALKKAPVFDGHNDVPWALRARVDNVIND CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC FDFVDTTDTATGDRIAMHTDLTRLRRGHVGAQFWSVYVPSTTNEAKAVQQTIEQIDVMKR CCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH LVARYPADLMLADNSAELEKAMKAGKVAGMLGIEGGHSIGSSLAVLREMYGMGVRYMTLT HHHHCCCCEEEECCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCEEEEEEE HGRNVPWADSATDAPEHGGLTDFGRQVVQEMNRIGMIVDLSHVSEATMKDALAASKAPVM CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCEE FSHSGVRAINDHPRNVPDSVLPAVKANGGIVMVVFLPGFLDADVRAHGLDRTGVEARLKA EECCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCHHHHHEE MYPGDPAAVAAALTAWDAANPAPKTQIARVADHIDHLKHMIGVDHIGLGGDYDGMDSAPV CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GMEDVAGYPALFVELARRGYSQAELEKIASGNMLRVLKAVEAFAASQKGQPPVETPVAK CHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MNKASLLVSLAALALVSSPVAAQTSPEAVAAAALKKAPVFDGHNDVPWALRARVDNVIND CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC FDFVDTTDTATGDRIAMHTDLTRLRRGHVGAQFWSVYVPSTTNEAKAVQQTIEQIDVMKR CCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH LVARYPADLMLADNSAELEKAMKAGKVAGMLGIEGGHSIGSSLAVLREMYGMGVRYMTLT HHHHCCCCEEEECCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCEEEEEEE HGRNVPWADSATDAPEHGGLTDFGRQVVQEMNRIGMIVDLSHVSEATMKDALAASKAPVM CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCEE FSHSGVRAINDHPRNVPDSVLPAVKANGGIVMVVFLPGFLDADVRAHGLDRTGVEARLKA EECCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCHHHHHEE MYPGDPAAVAAALTAWDAANPAPKTQIARVADHIDHLKHMIGVDHIGLGGDYDGMDSAPV CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GMEDVAGYPALFVELARRGYSQAELEKIASGNMLRVLKAVEAFAASQKGQPPVETPVAK CHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]