| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487755
Identifier: 103487755
GI number: 103487755
Start: 2393954
End: 2395954
Strand: Reverse
Name: 103487755
Synonym: Sala_2274
Alternate gene names: NA
Gene position: 2395954-2393954 (Counterclockwise)
Preceding gene: 103487762
Following gene: 103487754
Centisome position: 71.62
GC content: 62.92
Gene sequence:
>2001_bases ATGCGAGGGACCTGGATCAGCCGGCTGTGCGCCGGCACCAAATCGCTCATAAGCGACCAGCGCGGCAACGCCTTCATGCT GACCGCCGCGGCGATCATCCCGGTGATCGGCTTTGTCGGTTCGGCGGTCGACATCGGCCGCGCCTATATGACGCAATTGC GTTTGCAGCAGGCCTGCGATGCCGGCGTGCTCGCCGGGCGCCGCGCGATGGGCGGCGCCAGCTATGACGAAGCGGCGCAG GCCGAAGCGAACAAGATGTTCAACTTCAACTTCCCCGAAGCCAAATATGGCGCGACGGGCATTCTCTTTTCGTCGCGTGC GCTCAATGCCTCCGACGTCGAGGGACAGGCCTCGGCGGTGCTGCCGACCGAGCTGATGTTCATGTTCGGCAAGGAGGAGT TCCGCCTGTCGGCCGATTGCACCGCAAAGCTCGAAATCTCGAACGTCGATGTCATGCTGGTGCTCGACGTCACCGGGTCG ATGGCGCAGACCAACGCGGGCGACTCGGTCAACCGCATCACCGCGCTCAAAGACGCGACGATGGACTTTTTCGACACGCT GACCAACGCCGATGTCGGCGACGGGCGGCTGCGCTTTGGCGTCGTGCCCTATAGTTCGACCGCGAATGTCGGCCAGATTC TTCTCGCGAAAAATCCGGCGTGGTTGGCCGATACGGTCACGCTGCCGTCGCGGACGCCCATTTTCCGCGAAGTTTATACC GAGACGGGAACCGAGACGAGCGACGACTATACCGACAGTCCGACGACCTATTCGTCAAACTGGACCAATGACGGCACCGT ACCGGCAAGCAACAGCGCGGCCTGCGCGGCGCTGACGCCGCCGGCAAACACCACGCCGTCTCCGAGCGGATCGCCGGACT ATAACCAGACGGGCCAATATGTCGACGGCGACACGCGCGTCACGACCTATGACACCGTTCAAACCTACACCTTCCGTACC TATCGTTACGTCTGGTCCAGCAACCGGTGCCGCAGGCAGTATCGCAACGGCAATTTCACGCGCACCTATACCACGACGGT CACCGAAACGAAGACCGACGTTTTCGACAATAAATACACCTATGAGGACCGCGTTTTCGACGTCAGCGGGGTGAAGAGCG GTTCGGCGATCGTCACCGACACCGGCGATTCGGGAGTCAGCATCAGCCATAACTGGGGCGGGTGCCTGATCGAACGGGCA ACGACCCCGTTCGACGCCGACGACACCGCGCCGTCGGACGCGCTAGACATGGATATCGACCTGGTGCCCGACGCCGATGC CGATACGCAATGGCGGATCCTGATCCCCGAGATCGCCTTTCCGCGCGCGCGCCACCCCCAATATGCGCCGTCCAGCAGCG ATCCGATGACGGTCAACGTGTTCAACAGCGATGGCACCCGGAACATCACGTCGGACACGAGTTCAAACGGTCGCTGGCAG CGTTATTCCAAATATTGGGGCAGTGGCTGGGGCGTCTGCCCGGCGGCAGCGATGAAGCTGACGACGATGACGGCCAGCGA CCGCGCAACCTTCAACACCTATGTCCAGTCGCTGCAACCGCTGGGCGGCACCTATCACGACGCCGGCATGGTCTGGGGCG CGCGGCTGTTGTCGCCGACCGGGCTGTTCGCCGACGAAAATGCGACGGCGCCGAACGATCGCCCGATCAGCCGCCATATC GTCTTCATGACCGACGGCGCCATGGCGCCGAACATGGGTAATCTGACCTTCCAGGGCTATGAGTTTCTGATGCACCGCGT CGGCGGGACGAGCGACAGCGATCTGCGCGACCGCCACAATAACCGCTTCACGCAATTGTGCCGGGCGGCGCGGCAGCGCG GGATCACCATCTGGGTCGTGTCCTTCGGGGTCGGCAGCAACGACAGCCTGAACAACTGCGCGTCGTCGGGCCAGGCGTTC GAGGCCGACAATGCCGCCGAACTCAACGAACAGTTCCAGGCGATCGCGCGGCAGATTTCCAAGCTGAGGCTGGCGCAATG A
Upstream 100 bases:
>100_bases CGCCGCTGATTAGCATTTTGGTAAGCAGTCACCCCCTAGGTGCGAGTTTACCAGCGGCACATCGGTTGGGGAGTGTCGCG GGCCGAAGAGGGGTTAGACC
Downstream 100 bases:
>100_bases GCCGCGCGCACGCGCCCTTGCGCCGTCTGGTCCGCCGCCTGCGGACGAGCGAGCGCGGCACCGCCTTCATCGAATTCGCC TTTACCGCGCCGGTGTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 666; Mature: 666
Protein sequence:
>666_residues MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF EADNAAELNEQFQAIARQISKLRLAQ
Sequences:
>Translated_666_residues MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF EADNAAELNEQFQAIARQISKLRLAQ >Mature_666_residues MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF EADNAAELNEQFQAIARQISKLRLAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72468; Mature: 72468
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACD CCCHHHHHHHHCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC AGVLAGRRAMGGASYDEAAQAEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAV CHHHHCCHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC LPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGSMAQTNAGDSVNRITALKDAT CHHHHHHHHCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH MDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHH ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQY HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE VDGDTRVTTYDTVQTYTFRTYRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYT ECCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHCCCCEEEEEEEEEECCHHHHCCCCEE YEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERATTPFDADDTAPSDALDMDID CCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEE LVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHH RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPT HHHHHHCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC GLFADENATAPNDRPISRHIVFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHN CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHC NRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAFEADNAAELNEQFQAIARQIS HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KLRLAQ HHHCCC >Mature Secondary Structure MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACD CCCHHHHHHHHCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC AGVLAGRRAMGGASYDEAAQAEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAV CHHHHCCHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC LPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGSMAQTNAGDSVNRITALKDAT CHHHHHHHHCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH MDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHH ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQY HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE VDGDTRVTTYDTVQTYTFRTYRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYT ECCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHCCCCEEEEEEEEEECCHHHHCCCCEE YEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERATTPFDADDTAPSDALDMDID CCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEE LVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHH RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPT HHHHHHCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC GLFADENATAPNDRPISRHIVFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHN CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHC NRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAFEADNAAELNEQFQAIARQIS HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KLRLAQ HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA