Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487749

Identifier: 103487749

GI number: 103487749

Start: 2386533

End: 2387246

Strand: Direct

Name: 103487749

Synonym: Sala_2268

Alternate gene names: NA

Gene position: 2386533-2387246 (Clockwise)

Preceding gene: 103487748

Following gene: 103487750

Centisome position: 71.34

GC content: 67.37

Gene sequence:

>714_bases
ATGTCCGCTTTCGACGATCCGCTTCTCGACCGCCGCACCGCGGTGCTTGCGCTTTCGGGCGCCGCGCTGACGCTGATGGC
CGCCACGCCCGCCAGAACGACCTGGTCGCGAACGGTGACGACCAGCCCGATCGGCGCCTATATCGTCGGCAATCCCGCGG
CAAAGCTGCGGCTGGTCGAGTATTTCAGCTACACCTGCCACGTCTGCGCCGATTTCGCGAAGGCGGCGTCACTCCCGCTC
AGGACGCAATATATCGACCCTGGACTTGTCCGCTTCGAATATCGCAACCTCGTGCGCGATCCCGTCGACATGACCGCGGC
GCTGCTCGCGCGCGTCGGCGGCCCCAGCGCCTTCACGGACAATCATCAGGCGATCTTTGCCGCCTTCCCGACCTTCATCG
CCAGGGTTCAGAAAGCCACCGACGCGCAAAAGTCCAGCTGGTTCGAGGGCAGCGTGGCGCAGCGCGCGCGCCGGATTGCG
GCCGACACCGGCCTCGCCGCGCTGATGCGCGCGCGCGGCTATTCGGAGGCGCAGCTCACCGCCGCCCTCGACAGCGAAGT
CGCGCAGGCCGAGCTTGTCGGCATGACCAACATTGGCCGCGCCGCCGACCGCGTCACCGGCACGCCCAGCTTTTTCATCA
ATGGCCAGCGCGCCGATGTCGTCGCCTGGCCCGCGCTCAAATCGAAACTCGACGCCGCGCTCAAGGCTGCGTAG

Upstream 100 bases:

>100_bases
CGCGACATTGGCGACCCGGAGCTGCGCACCGTGCTCGAACGCATGGCCGCGGGCCTCGCGGCGCCGCCGCGGCTCCCCAA
GATCAGCTAGGGCCAACAGC

Downstream 100 bases:

>100_bases
AAACCCCGCATTCCCGAACCCGTGGAGATGAATATATGACCGCATCGCTTCGCATCGCCCTTCTCGCTTCGCTCGGCGCG
CTCGCGCTGGCCGGCTGCGG

Product: protein-disulfide isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPL
RTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIA
ADTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA

Sequences:

>Translated_237_residues
MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPL
RTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIA
ADTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA
>Mature_236_residues
SAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPLR
TQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAA
DTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA

Specific function: May be required for disulfide bond formation in some proteins [H]

COG id: COG1651

COG function: function code O; Protein-disulfide isomerase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR017937
- InterPro:   IPR012335 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25358; Mature: 25227

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVE
CCCCCCCHHHHHHEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHH
YFSYTCHVCADFAKAASLPLRTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTD
HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
NHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAADTGLAALMRARGYSEAQLT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCEEECHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVE
CCCCCCHHHHHHEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHH
YFSYTCHVCADFAKAASLPLRTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTD
HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
NHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAADTGLAALMRARGYSEAQLT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA