| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yjgR [H]
Identifier: 103487505
GI number: 103487505
Start: 2132342
End: 2134015
Strand: Reverse
Name: yjgR [H]
Synonym: Sala_2022
Alternate gene names: 103487505
Gene position: 2134015-2132342 (Counterclockwise)
Preceding gene: 103487506
Following gene: 103487504
Centisome position: 63.79
GC content: 65.53
Gene sequence:
>1674_bases ATGGCGCGGGTTTGCAGATTGCTTGTGCGCCGACGCCGTTCTAACCGTTGCAGCGGGTTATCCAGCGGAGGATGGCGAGT GAGCGAAGGCAGCGCGGCGAGCGAAATCTATATCGGCCTCGGCGGCGGCGGGGCGCCCGAGGGGCCGCGGCAGTCGCTGG TGCTGAAGCGCGCGAACCGGCACGGGCTGATCGCCGGCGCAACGGGGACCGGCAAGACGGTGACGTTGCAGGGGTTGGCC GAAGGCTTTTCGGCAGTGGGTGTGCCGGTCTTCGTCGCCGACGTGAAAGGCGACCTTGCCGGCATGGCGATGGCGGGAAG CCCGACCGCCAGGGTTCACGAGCCCTTTTCGAAGCGTGCCGCCGAAATCGGTGACACCGACTGGGCCTATCGCGACAATC CCGTGATCTTCTGGGACCTGTTCGGCGAACAGGGGCATCCGGTGCGCACGACGATCTCCGAAATGGGGCCGCTGCTGCTT GCGCGGCTGATGGGGCTCAACGAGACGCAGGAAGGGGTGCTCGCGATTGCGTTTAGGGTAGCTGACGAGCAGAATATGTT GCTGCTCGACCTGGGCGATTTGCAGGCGATGCTCGTCTGGTGCGCCGAAAATGCCGATGAGCTGACAGCGAAATATGGCA ATGTCACCAAGGCGAGCGTCGGGGCGATCCAGCGGCAGCTGCTGACGCTCGAAAGCCAGGGCGGCGATCATTTCTTCGGC GAACCCGCGCTCGACATTCAGGACATGATCCGTACCGACGAGAATGGCCGCGGCTATGTGAACATCCTTGCCGCCGACAG GCTGATGGCGAGCCCCAAGCTCTATGCGACCTTTCTCCTCTGGCTGCTGAGCGAGATGTTCGAGACGCTGCCCGAGGTCG GCGATCCCGACAAGCCGAAGCTGGTTTTCTTCTTCGACGAGGCGCATCTGCTGTTCGACGATGCCCCGCCCGCGCTCACC GACAAGATTGAACAGGTCGTGCGCCTGATCCGCTCGAAAGGGGTCGGCGTCTATTTCGTCACGCAAAACCCGATCGACAT TCCCGAGGCGGTCGCGGGTCAGCTGGGCAATCGCGTCCAGCACGCGCTGCGCGCCTTTACCCCGCGTGATCAGAAGGCGG TGAAGGCCGCCGCGGACACCTTTCGCCCCAATCCGAAGATCGATGTGGCGCGTGAGATCACCGAGCTGCGCGTTGGCGAG GCGCTGGTGTCGCTGCTGATGCCCGATGGCGCCCCGTCGCCGGTCGAGCGCACATTGATCAAGCCGCCTTGCTCGCGCGC GGGGCCGCTCGATGCCAAGGAACGCGCGATCATCCGGTCGATCTCGCCGGTCGAGGGCAAATATGACACGGCGGTCGACC GCGAAAGCGCCGAGGAACTGCTCGCCGTCAAGGCCGAGCAGGCGCAGGCGGCCGCGATCGAGGCGAAGGCGCAGGAGGAG GCCGACAAGGCGGCCGCGATCGCGGCGAAGGAAGAGGCGAAGCGCAAGGCGGCCGAGGAGCGCGAGCGCATCCGGCTGGA AAAAGCGGCGGCACGCGAGGCAGCGAAACCGAGCATGGCCGAAAAGATGGTGCAGTCGGCGGCGCGTTCGGCGGCGACGA GTCTCGGGCGCCAGGTTGCGGGCCGACTGGGCGGTCAGCTGATGCGCGGGATTTTGGGAAGCCTGTTCAAATAG
Upstream 100 bases:
>100_bases CTGCTCCTCGCGGCGCTGGCACACGGCGCGGCATAAGTCGCACCGCGCCTGTCGGGCAATGAAAGGCCCCGCCGGAGCGA TCCGGCGGGGCCTTTTGTGT
Downstream 100 bases:
>100_bases GCCGTCGACTCCGCGACCGATTCGCGGCAGTTTTGGTTGCATGACAAAACCTATATTGCCCGGAGAGGTCGCCGCCGCGG TCGTCAATCCCGCCGCCTAT
Product: protein of unknown function DUF853, NPT hydrolase putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MARVCRLLVRRRRSNRCSGLSSGGWRVSEGSAASEIYIGLGGGGAPEGPRQSLVLKRANRHGLIAGATGTGKTVTLQGLA EGFSAVGVPVFVADVKGDLAGMAMAGSPTARVHEPFSKRAAEIGDTDWAYRDNPVIFWDLFGEQGHPVRTTISEMGPLLL ARLMGLNETQEGVLAIAFRVADEQNMLLLDLGDLQAMLVWCAENADELTAKYGNVTKASVGAIQRQLLTLESQGGDHFFG EPALDIQDMIRTDENGRGYVNILAADRLMASPKLYATFLLWLLSEMFETLPEVGDPDKPKLVFFFDEAHLLFDDAPPALT DKIEQVVRLIRSKGVGVYFVTQNPIDIPEAVAGQLGNRVQHALRAFTPRDQKAVKAAADTFRPNPKIDVAREITELRVGE ALVSLLMPDGAPSPVERTLIKPPCSRAGPLDAKERAIIRSISPVEGKYDTAVDRESAEELLAVKAEQAQAAAIEAKAQEE ADKAAAIAAKEEAKRKAAEERERIRLEKAAAREAAKPSMAEKMVQSAARSAATSLGRQVAGRLGGQLMRGILGSLFK
Sequences:
>Translated_557_residues MARVCRLLVRRRRSNRCSGLSSGGWRVSEGSAASEIYIGLGGGGAPEGPRQSLVLKRANRHGLIAGATGTGKTVTLQGLA EGFSAVGVPVFVADVKGDLAGMAMAGSPTARVHEPFSKRAAEIGDTDWAYRDNPVIFWDLFGEQGHPVRTTISEMGPLLL ARLMGLNETQEGVLAIAFRVADEQNMLLLDLGDLQAMLVWCAENADELTAKYGNVTKASVGAIQRQLLTLESQGGDHFFG EPALDIQDMIRTDENGRGYVNILAADRLMASPKLYATFLLWLLSEMFETLPEVGDPDKPKLVFFFDEAHLLFDDAPPALT DKIEQVVRLIRSKGVGVYFVTQNPIDIPEAVAGQLGNRVQHALRAFTPRDQKAVKAAADTFRPNPKIDVAREITELRVGE ALVSLLMPDGAPSPVERTLIKPPCSRAGPLDAKERAIIRSISPVEGKYDTAVDRESAEELLAVKAEQAQAAAIEAKAQEE ADKAAAIAAKEEAKRKAAEERERIRLEKAAAREAAKPSMAEKMVQSAARSAATSLGRQVAGRLGGQLMRGILGSLFK >Mature_556_residues ARVCRLLVRRRRSNRCSGLSSGGWRVSEGSAASEIYIGLGGGGAPEGPRQSLVLKRANRHGLIAGATGTGKTVTLQGLAE GFSAVGVPVFVADVKGDLAGMAMAGSPTARVHEPFSKRAAEIGDTDWAYRDNPVIFWDLFGEQGHPVRTTISEMGPLLLA RLMGLNETQEGVLAIAFRVADEQNMLLLDLGDLQAMLVWCAENADELTAKYGNVTKASVGAIQRQLLTLESQGGDHFFGE PALDIQDMIRTDENGRGYVNILAADRLMASPKLYATFLLWLLSEMFETLPEVGDPDKPKLVFFFDEAHLLFDDAPPALTD KIEQVVRLIRSKGVGVYFVTQNPIDIPEAVAGQLGNRVQHALRAFTPRDQKAVKAAADTFRPNPKIDVAREITELRVGEA LVSLLMPDGAPSPVERTLIKPPCSRAGPLDAKERAIIRSISPVEGKYDTAVDRESAEELLAVKAEQAQAAAIEAKAQEEA DKAAAIAAKEEAKRKAAEERERIRLEKAAAREAAKPSMAEKMVQSAARSAATSLGRQVAGRLGGQLMRGILGSLFK
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yjiB [H]
Homologues:
Organism=Escherichia coli, GI1790714, Length=501, Percent_Identity=55.2894211576846, Blast_Score=509, Evalue=1e-145,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 [H]
Pfam domain/function: PF05872 DUF853 [H]
EC number: NA
Molecular weight: Translated: 59994; Mature: 59863
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVCRLLVRRRRSNRCSGLSSGGWRVSEGSAASEIYIGLGGGGAPEGPRQSLVLKRANR CHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCC HGLIAGATGTGKTVTLQGLAEGFSAVGVPVFVADVKGDLAGMAMAGSPTARVHEPFSKRA CCEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEECCCCHHCEEECCCCCHHHCCCHHHHH AEIGDTDWAYRDNPVIFWDLFGEQGHPVRTTISEMGPLLLARLMGLNETQEGVLAIAFRV HHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE ADEQNMLLLDLGDLQAMLVWCAENADELTAKYGNVTKASVGAIQRQLLTLESQGGDHFFG CCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC EPALDIQDMIRTDENGRGYVNILAADRLMASPKLYATFLLWLLSEMFETLPEVGDPDKPK CCCCCHHHHHHCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE LVFFFDEAHLLFDDAPPALTDKIEQVVRLIRSKGVGVYFVTQNPIDIPEAVAGQLGNRVQ EEEEECCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH HALRAFTPRDQKAVKAAADTFRPNPKIDVAREITELRVGEALVSLLMPDGAPSPVERTLI HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC KPPCSRAGPLDAKERAIIRSISPVEGKYDTAVDRESAEELLAVKAEQAQAAAIEAKAQEE CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ADKAAAIAAKEEAKRKAAEERERIRLEKAAAREAAKPSMAEKMVQSAARSAATSLGRQVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH GRLGGQLMRGILGSLFK HHHHHHHHHHHHHHHCC >Mature Secondary Structure ARVCRLLVRRRRSNRCSGLSSGGWRVSEGSAASEIYIGLGGGGAPEGPRQSLVLKRANR HHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCC HGLIAGATGTGKTVTLQGLAEGFSAVGVPVFVADVKGDLAGMAMAGSPTARVHEPFSKRA CCEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEECCCCHHCEEECCCCCHHHCCCHHHHH AEIGDTDWAYRDNPVIFWDLFGEQGHPVRTTISEMGPLLLARLMGLNETQEGVLAIAFRV HHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE ADEQNMLLLDLGDLQAMLVWCAENADELTAKYGNVTKASVGAIQRQLLTLESQGGDHFFG CCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC EPALDIQDMIRTDENGRGYVNILAADRLMASPKLYATFLLWLLSEMFETLPEVGDPDKPK CCCCCHHHHHHCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE LVFFFDEAHLLFDDAPPALTDKIEQVVRLIRSKGVGVYFVTQNPIDIPEAVAGQLGNRVQ EEEEECCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH HALRAFTPRDQKAVKAAADTFRPNPKIDVAREITELRVGEALVSLLMPDGAPSPVERTLI HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC KPPCSRAGPLDAKERAIIRSISPVEGKYDTAVDRESAEELLAVKAEQAQAAAIEAKAQEE CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ADKAAAIAAKEEAKRKAAEERERIRLEKAAAREAAKPSMAEKMVQSAARSAATSLGRQVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH GRLGGQLMRGILGSLFK HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]