Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487405

Identifier: 103487405

GI number: 103487405

Start: 2024692

End: 2025897

Strand: Reverse

Name: 103487405

Synonym: Sala_1921

Alternate gene names: NA

Gene position: 2025897-2024692 (Counterclockwise)

Preceding gene: 103487406

Following gene: 103487404

Centisome position: 60.56

GC content: 70.07

Gene sequence:

>1206_bases
ATGCCTGAAATCCTGTTCCTCGTGCATCGCGCGCCGTGGCCGCCCGACCGCGGCGACCGCATCCGCAGCTGGCATATGTT
CGAGGCGCTGGCGAAACTGGCGCCGGTGCATGTGGCGGCGCTCGCCGATAATGATGCCGATGCCGCACTTGCGCGCGCGA
AACTGGCGCCGCTTTGCAAGAGCCTGGCGATCGAAGGGCGCCGGGTGTCGCGTCCGATCGCCTTGGCAGAGGCCGTGCTG
CGCCGTGAGCCGGTGTCGATCCACCTGTTTCGGAGCAAGGCCCTGGCGCGTCAGGTCGATGCGCTGATCGGGCGGGGCGA
CATCAGCCATATCGTCGCCTTTTCGGGGCAGATGGCGCAATATCTGCCCGCCCGGTTCGACGGCCCGGTGCTGATGGATT
TCGTCGACGTCGATTCGGCCAAGTTCGGCGCCTACGCCAAGCAGGACAGGCGCCAGCCGCTCAACTGGGTGCATCGGCGC
GAGGCGCGGGTGCTCGGCGCCTATGAGGTCGGGATCGCGCGGCGCGTCGCCGCCAGCCTGTTCGTCAGCGAGGCCGAAGC
GGCGCTCTTTCGGCAAAAGAGCGGGTTGGCGGCCGATAAGGTGCTGGCGGTCGGGAACGGGATCGACACCGATCGTTTCG
ACCCGGCGCTGCCGTTTGATCCGGTGGGTCATGGCGACGGGCCGCTTGCGGTGTTCACCGGGCAGATGGACTATCGCCCC
AATATCGACGCGGCGCGCTGGTTCGCCGCCGATATTTTGCCGCTGATCCGGCGGCGACACCCCGCGGCGCGCTTCGCGGT
CGTCGGGCGCGCGCCGAGCGCGGAGGTGCGCGCGCTCGCGAAGCAGCCCGGCGTGATCGTGACCGGCGAAGTGCCCGACG
TGCGGCCGTGGCTTGCCGCCGCCGACGCGGTGGTGGCCCCGCTCCTGCTCGCGCGCGGTGTGCAGAACAAATTGCTCGAG
GCGATGGCGATGGCGCGACCGGTAGTGGCGAGCGCCGCCGCGGCGACGGGAATCGACGCGGCGCCGGGCGAACATCTGCT
CGTCGCGGATGATGCCGCGGCGATGGCCGACGCGGTGTGCATGCTGTTCGGCGATCGCGATGCGGCGGCGCACATGGGAC
AGGCGGCACGCGCACGGATGATCGCGCGCTATGGCTGGGACGCGCGCATGGCGCCGCTTGGCGCATTGCTGGGGCTGCCC
GCATGA

Upstream 100 bases:

>100_bases
CCGCAGGCGAAGCAATCTCCAGAAGGCGGCCTTGTGCGCGGTCGATGGCTGGAGATTGCCGCGTCGCCTTCGGCTCCTCA
CAATGATGGAGTAGGGGGCG

Downstream 100 bases:

>100_bases
CACGCTGGCAGCGCCATCTGGTCACGCTGGCCTTGCTGGCGGCGGTGATCCTCGCGCTCTTCTGGCGCGACGCCGCCGAC
ATGGCGGGCATCTGGTGGAA

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: Glycosyltransferase; Glycosyl Transferase; Glycosyl Transferase Group 1 Family Protein; Sugar Transferase; Glycosyltransferase Group 1 Protein; Glycosyltransferase-Like Protein

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVL
RREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRR
EARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP
NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLE
AMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLP
A

Sequences:

>Translated_401_residues
MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVL
RREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRR
EARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP
NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLE
AMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLP
A
>Mature_400_residues
PEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVLR
REPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRRE
ARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRPN
IDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLEA
MAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42973; Mature: 42842

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCK
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
SLAIEGRRVSRPIALAEAVLRREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQ
HHHCCCCHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
YLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRREARVLGAYEVGIARRVAASL
HCCCCCCCCEEEEEEECCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP
HHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAA
CCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHH
ADAVVAPLLLARGVQNKLLEAMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH
MLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA
HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCK
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
SLAIEGRRVSRPIALAEAVLRREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQ
HHHCCCCHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
YLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRREARVLGAYEVGIARRVAASL
HCCCCCCCCEEEEEEECCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP
HHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAA
CCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHH
ADAVVAPLLLARGVQNKLLEAMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH
MLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA
HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA