| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487353
Identifier: 103487353
GI number: 103487353
Start: 1965381
End: 1966205
Strand: Reverse
Name: 103487353
Synonym: Sala_1869
Alternate gene names: NA
Gene position: 1966205-1965381 (Counterclockwise)
Preceding gene: 103487354
Following gene: 103487352
Centisome position: 58.78
GC content: 66.3
Gene sequence:
>825_bases ATGATGACCGCAGCCGATCCCGCGCTGGCCAAGTGCCGCCTGATGGTGGCGACGCCCATTTATGAGGGCGCACAGGGCAC CTATGTCCGCGCCGCGCTCGATCTGGCGCTGCGCGCGCAGGCGATGGGCGTGCCGGTGCGGTTCGAGTTCATCCTGTATC AGCCGTCGATCACCCGCGCGCGCAACATGCTGGCCGCGATGTTCCTCGCGAGCGACTGCACCCACCTGCTGTTCGTCGAT GCCGACATCGATTTTTCGGTCGACGATGTCTTCTCGCTGGTCCGCGCGATGGACGCGCACGCCGAAGTCGGCGTCCTCGG TGGCCCCTGTCCGCGGCGGATGATCAACTGGCGCAACGTCGCACGCGCGGTCGAGCAGGGGCTGGCAAAGGACAACCCCG CCGATCTTGCGCGTTATTCGGGGGATTATGCGCTGCATTTCCTGAACCCGCGGCAAAGCTTCAAGATGACCGACCTGGTC GAGCTGGCGCGGCTCGGCACCGCGATGATGCTGATCCGCCGCGAGGTGCTCGAAGCGATGCGCACCGCCTTGCCCGATCT CGTCTTTCGCCCCGATCCCGCCGAGCGGCAGGCGCATGGCGTCGGCGAACGCGAGCCCGCCTTTTTCTGCCCGATGATCG AGCCCGAAAGCGAGGCGCTGCTGTCCGACGACTATGCCTTTTGCCGCCGCGTGCGCGACGCGGGCTTTCGCATCTGGCTC GCGCCGTGGGTCCGCACCACCCATGCGGGGCCGATGGTCTTCGCCGGTGCGCTTGCCGACACGGCGCAGCTTTATTCTGT CAATCCAGACTCTTCTGTGGAGTAG
Upstream 100 bases:
>100_bases AAGAGCCAGCTCGACGCCCTGATGGACGCAAAGGCCTACAAGGCTTTCTGCGACGCCCTCTAACCGACCGCCCCGCCCGC GGACGGGAGGGGGAAGGGAC
Downstream 100 bases:
>100_bases TTCATGCGTTATCTCCCGCTCACTCCCGATGACCGCGCAGCGATGCTGGGGGCCATCGGTGCGTCGTCGATCGACGAACT GTTCGCCGATGTCCCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE
Sequences:
>Translated_274_residues MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE >Mature_274_residues MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30387; Mature: 30387
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRA CCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH RNMLAAMFLASDCTHLLFVDADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNV HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH ARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLVELARLGTAMMLIRREVLEAM HHHHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL HHHCCHHEECCCCHHHHHCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEE APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE ECHHHHCCCCHHHHHHHHHCCHHEEEECCCCCCC >Mature Secondary Structure MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRA CCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH RNMLAAMFLASDCTHLLFVDADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNV HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH ARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLVELARLGTAMMLIRREVLEAM HHHHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL HHHCCHHEECCCCHHHHHCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEE APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE ECHHHHCCCCHHHHHHHHHCCHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA