| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487285
Identifier: 103487285
GI number: 103487285
Start: 1897539
End: 1898003
Strand: Reverse
Name: 103487285
Synonym: Sala_1801
Alternate gene names: NA
Gene position: 1898003-1897539 (Counterclockwise)
Preceding gene: 103487286
Following gene: 103487282
Centisome position: 56.74
GC content: 65.81
Gene sequence:
>465_bases ATGGCTGACAGCCCGATCCACCACGCCAGCTTTTCCGTCGAACGCGCCTATCGTTCGCCGCGTCAACGGGTTTTCGCCGC CTTCACCAGTGCCGAGGCGCGGCGCCGCTGGCTTGTCGAAACCGACGGCTGGACCGTCCACGCCTATGATCCGCCCGCCG AAGTCGTACCGGGCGCTGTGGAGTCAAGCCGTTTCAGCCCGCCGGGTGCCGACGTCGTCCTGACCAATGATACGACCTAC CTCGATGTGGCGCCGCAGGAACGGCTGATCTTCGCCTATGCCATGACGGTCGATGGAAAGCCGCTGTCCTCGTCGCTCGC GACCGTCGAGTTTTTTGATGAGGGGCAGGGCGCGCGCATCCGCTTTACCGAACAGGGCGCCTATCTCGACGGCGATGTGG CCGGACGCGAAGCCGGAACGCGCGAACTGCTGGACGGGCTGGCGACGGAACTCGGCGAGGCCTGA
Upstream 100 bases:
>100_bases GTCGAACGCTGGGTGGCCGAGCAGAAGAAAGCCTGGGAGCGCCGACTCGACCGGCTCGGTGACTATCTGGGCGAATCCCC CGGAAATGAAAGGAATGACC
Downstream 100 bases:
>100_bases GCGGTGATGGCACAAGGAGGCGGCGGGGCATTGGCGCGCCGCCCCCTTTTTCATACGCTACGCTGCTCGTCGAGGAAGGC GGCGACGGCATCTAGGTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MADSPIHHASFSVERAYRSPRQRVFAAFTSAEARRRWLVETDGWTVHAYDPPAEVVPGAVESSRFSPPGADVVLTNDTTY LDVAPQERLIFAYAMTVDGKPLSSSLATVEFFDEGQGARIRFTEQGAYLDGDVAGREAGTRELLDGLATELGEA
Sequences:
>Translated_154_residues MADSPIHHASFSVERAYRSPRQRVFAAFTSAEARRRWLVETDGWTVHAYDPPAEVVPGAVESSRFSPPGADVVLTNDTTY LDVAPQERLIFAYAMTVDGKPLSSSLATVEFFDEGQGARIRFTEQGAYLDGDVAGREAGTRELLDGLATELGEA >Mature_153_residues ADSPIHHASFSVERAYRSPRQRVFAAFTSAEARRRWLVETDGWTVHAYDPPAEVVPGAVESSRFSPPGADVVLTNDTTYL DVAPQERLIFAYAMTVDGKPLSSSLATVEFFDEGQGARIRFTEQGAYLDGDVAGREAGTRELLDGLATELGEA
Specific function: Unknown
COG id: COG3832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16782; Mature: 16650
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSPIHHASFSVERAYRSPRQRVFAAFTSAEARRRWLVETDGWTVHAYDPPAEVVPGAV CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCHHHCCCCC ESSRFSPPGADVVLTNDTTYLDVAPQERLIFAYAMTVDGKPLSSSLATVEFFDEGQGARI CCCCCCCCCCCEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEE RFTEQGAYLDGDVAGREAGTRELLDGLATELGEA EEECCCCEECCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure ADSPIHHASFSVERAYRSPRQRVFAAFTSAEARRRWLVETDGWTVHAYDPPAEVVPGAV CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCHHHCCCCC ESSRFSPPGADVVLTNDTTYLDVAPQERLIFAYAMTVDGKPLSSSLATVEFFDEGQGARI CCCCCCCCCCCEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEE RFTEQGAYLDGDVAGREAGTRELLDGLATELGEA EEECCCCEECCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA