| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yhjE [H]
Identifier: 103486994
GI number: 103486994
Start: 1572460
End: 1573788
Strand: Direct
Name: yhjE [H]
Synonym: Sala_1509
Alternate gene names: 103486994
Gene position: 1572460-1573788 (Clockwise)
Preceding gene: 103486986
Following gene: 103486995
Centisome position: 47.01
GC content: 65.99
Gene sequence:
>1329_bases ATGGCTGCCGACACCGTCCCGACGACCGAGGCCGAACGCGACGCTCGCGCCCTCCACGACCATGACGGCCACCGCATCGA CCCCGCCGAAATCGCCATCGGCGTCATCATCGGCCGGACCTCAGAGTTTTTCGACTTCTTCGTCTATGCGATCGCTTCGG TGCTGGTATTTCCCAAGCTCGTCTTTCCGCACCTCGATCCGCTGGCGGGCACACTCTGGTCCTTCGCGATCTTTGCCCTC GCCTTTGTCGCGCGCCCGGTCGGAACGGTCATCTTCACCGCGATCGACCGCGGTTATGGCCGTGGCGCCAAGCTCACCAT TGCGCTGTTCCTGCTTGGCGGATCGACCGCGGCGATCGCCTTCCTGCCCGGCTATGAATCGATCGGCATCGGCGCCGCGC TGCTGCTCGCGCTGTTCCGCATGGGCCAGGGCGTCGCGCTCGGCGGCTCATGGGACGGCCTCGCCTCGCTGCTCGCATTG AACGCCCCCGAATCGAAACGCGGCTGGTATGCGATGATCCCGCAGCTCGGCGCGCCGCTTGGCCTCATCGTCGCCAGCCT GCTCTTCATGTTCCTGATCTCCGCGCTCCCGGCCGAAGACTTTCTCGCCTGGGGTTGGCGCTATCCTTTCTTCGTCGCCT TTGCGATCAACGTCGTCGCGCTGTTCGCGCGGCTGCGCATCGTCGTGACCCCCGACTATGCCGAGCTGTTCGAAAACCGC GCGCTTCAGCCCGCGCCGCTCCTCGAAACGGTACGGTCGGAATGGAAAACCATCGTCACCGGCGCCTTCGCCCCGCTCGC CAGCTTCGCGATGTTCCACATGGTCACTGTCTATCCGCTGTCGTGGGTGTTCCTGTTCACCGACGAAACCCCCGCACGCT TCCTGATGATCGAGGCGATCGCTGCGGTCGGCGGCGTGATCGCGATCATCGCCTCGGGCTATCTTGCCGACCGCTTCGGG CGCCGCACCGTGCTTGCCGCGACGGCGGCGGCGATCGCGGCGTTCAGCGGCTTTGCCCCGCAATTGCTCGACGCGGGCCA GGCGGGTGAGGCGAGCTTCATGATCCTCGGCTTCCTCCTGCTCGGCCTGTCGTTCGGGCAATCGTCGGGCGCGCTCTCAT CGAACTTCACGCCGCGCCACCGCTACACCGGGTCGGCCTTCACCGCCGACCTCGCCTGGCTGTTCGGTGCTGGTTTCGCA CCGATGGTGGCGCTCTGGCTGTCGAGCGAATTCGGGCTGATCGCCGCGGGTGCCTATCTGCTGTCGGGCGCGATCGTTAC GCTCGTCGCGCTGTGGCTCAACCGCGAACTTGCACGCACGATCGATTGA
Upstream 100 bases:
>100_bases ATCGCGCAGGGGCGTTTTCATTGGGGGCGCTTTTGCCCTATGACCGACTCGTGCCCGCGCGTCCCCACGTGGCGCGGGCG CCAGCTCAAGGATCGATACC
Downstream 100 bases:
>100_bases GCCTGAGCCCCGCGGAGCAGCTTCAAAAGCGAGACGGGGGACGGCTCTCTGACGCATGGCAGGCACCGCTGATCTGCCCG GTCCGGGATCGGGTGGCAGG
Product: general substrate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MAADTVPTTEAERDARALHDHDGHRIDPAEIAIGVIIGRTSEFFDFFVYAIASVLVFPKLVFPHLDPLAGTLWSFAIFAL AFVARPVGTVIFTAIDRGYGRGAKLTIALFLLGGSTAAIAFLPGYESIGIGAALLLALFRMGQGVALGGSWDGLASLLAL NAPESKRGWYAMIPQLGAPLGLIVASLLFMFLISALPAEDFLAWGWRYPFFVAFAINVVALFARLRIVVTPDYAELFENR ALQPAPLLETVRSEWKTIVTGAFAPLASFAMFHMVTVYPLSWVFLFTDETPARFLMIEAIAAVGGVIAIIASGYLADRFG RRTVLAATAAAIAAFSGFAPQLLDAGQAGEASFMILGFLLLGLSFGQSSGALSSNFTPRHRYTGSAFTADLAWLFGAGFA PMVALWLSSEFGLIAAGAYLLSGAIVTLVALWLNRELARTID
Sequences:
>Translated_442_residues MAADTVPTTEAERDARALHDHDGHRIDPAEIAIGVIIGRTSEFFDFFVYAIASVLVFPKLVFPHLDPLAGTLWSFAIFAL AFVARPVGTVIFTAIDRGYGRGAKLTIALFLLGGSTAAIAFLPGYESIGIGAALLLALFRMGQGVALGGSWDGLASLLAL NAPESKRGWYAMIPQLGAPLGLIVASLLFMFLISALPAEDFLAWGWRYPFFVAFAINVVALFARLRIVVTPDYAELFENR ALQPAPLLETVRSEWKTIVTGAFAPLASFAMFHMVTVYPLSWVFLFTDETPARFLMIEAIAAVGGVIAIIASGYLADRFG RRTVLAATAAAIAAFSGFAPQLLDAGQAGEASFMILGFLLLGLSFGQSSGALSSNFTPRHRYTGSAFTADLAWLFGAGFA PMVALWLSSEFGLIAAGAYLLSGAIVTLVALWLNRELARTID >Mature_441_residues AADTVPTTEAERDARALHDHDGHRIDPAEIAIGVIIGRTSEFFDFFVYAIASVLVFPKLVFPHLDPLAGTLWSFAIFALA FVARPVGTVIFTAIDRGYGRGAKLTIALFLLGGSTAAIAFLPGYESIGIGAALLLALFRMGQGVALGGSWDGLASLLALN APESKRGWYAMIPQLGAPLGLIVASLLFMFLISALPAEDFLAWGWRYPFFVAFAINVVALFARLRIVVTPDYAELFENRA LQPAPLLETVRSEWKTIVTGAFAPLASFAMFHMVTVYPLSWVFLFTDETPARFLMIEAIAAVGGVIAIIASGYLADRFGR RTVLAATAAAIAAFSGFAPQLLDAGQAGEASFMILGFLLLGLSFGQSSGALSSNFTPRHRYTGSAFTADLAWLFGAGFAP MVALWLSSEFGLIAAGAYLLSGAIVTLVALWLNRELARTID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=441, Percent_Identity=36.9614512471655, Blast_Score=221, Evalue=5e-59, Organism=Escherichia coli, GI1788292, Length=424, Percent_Identity=28.7735849056604, Blast_Score=149, Evalue=5e-37, Organism=Escherichia coli, GI1790550, Length=419, Percent_Identity=27.6849642004773, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1788942, Length=410, Percent_Identity=29.5121951219512, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 47207; Mature: 47075
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADTVPTTEAERDARALHDHDGHRIDPAEIAIGVIIGRTSEFFDFFVYAIASVLVFPKL CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH VFPHLDPLAGTLWSFAIFALAFVARPVGTVIFTAIDRGYGRGAKLTIALFLLGGSTAAIA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEE FLPGYESIGIGAALLLALFRMGQGVALGGSWDGLASLLALNAPESKRGWYAMIPQLGAPL EECCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHCCCH GLIVASLLFMFLISALPAEDFLAWGWRYPFFVAFAINVVALFARLRIVVTPDYAELFENR HHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHCC ALQPAPLLETVRSEWKTIVTGAFAPLASFAMFHMVTVYPLSWVFLFTDETPARFLMIEAI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHH AAVGGVIAIIASGYLADRFGRRTVLAATAAAIAAFSGFAPQLLDAGQAGEASFMILGFLL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH LGLSFGQSSGALSSNFTPRHRYTGSAFTADLAWLFGAGFAPMVALWLSSEFGLIAAGAYL HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH LSGAIVTLVALWLNRELARTID HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AADTVPTTEAERDARALHDHDGHRIDPAEIAIGVIIGRTSEFFDFFVYAIASVLVFPKL CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH VFPHLDPLAGTLWSFAIFALAFVARPVGTVIFTAIDRGYGRGAKLTIALFLLGGSTAAIA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEE FLPGYESIGIGAALLLALFRMGQGVALGGSWDGLASLLALNAPESKRGWYAMIPQLGAPL EECCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHCCCH GLIVASLLFMFLISALPAEDFLAWGWRYPFFVAFAINVVALFARLRIVVTPDYAELFENR HHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHCC ALQPAPLLETVRSEWKTIVTGAFAPLASFAMFHMVTVYPLSWVFLFTDETPARFLMIEAI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHH AAVGGVIAIIASGYLADRFGRRTVLAATAAAIAAFSGFAPQLLDAGQAGEASFMILGFLL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH LGLSFGQSSGALSSNFTPRHRYTGSAFTADLAWLFGAGFAPMVALWLSSEFGLIAAGAYL HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH LSGAIVTLVALWLNRELARTID HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]