| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486986
Identifier: 103486986
GI number: 103486986
Start: 1564893
End: 1565315
Strand: Direct
Name: 103486986
Synonym: Sala_1501
Alternate gene names: NA
Gene position: 1564893-1565315 (Clockwise)
Preceding gene: 103486985
Following gene: 103486994
Centisome position: 46.78
GC content: 62.41
Gene sequence:
>423_bases ATGGCCCCTTCGTCCCGCAATCCCGACGCAATCTTCGACGCGCTGATTCCCGACCGCACCGACCCCGCTGCGCTGCGCAA GCGCGTCGAGATGCTCGAAATCCTGCTCGAACGCGGCTTTGTCATTCCAGGCATCAATCGCGCCGTCGGCCTCGATGCGA TCGTCGGGCTGGTCCCCGTCGTCGGCGACGTCATCGCCGCGACGATGGGCGCCTATCTGATCTGGGAAGCGCGCAACCTC GGTATGCCGAAGTGGAAGATCTGGCGCATGGTCGGCAATCTGGGAATCGACACGGCGCTCGGCGCTGTCCCGCTGGTCGG CGATGCCTTCGACTTTTTCTTCCGCTCGAACACGCGGAACCTCAGGATCATCAAGAAACATCTCGACAAGCATCATCCCG GAACGCTCGTCATCGAGCAGTAG
Upstream 100 bases:
>100_bases GGCCCGATATCTTCGCCATTTCGACGCCTCGAACGGGGAATTAATGGGTCCTGACCCTAATACAGTGGTGCTCGCACTGG AGTGCTTCTAAAGGACCCCG
Downstream 100 bases:
>100_bases CAGCGTCGTCATCCCGGCGAAGGCCGGGGGAGGACGATCGGGTGAACAGGATGATGGGTCCCGGCCCGGTCCCGCTCAGC GGACCTGCCGTTTCTCCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MAPSSRNPDAIFDALIPDRTDPAALRKRVEMLEILLERGFVIPGINRAVGLDAIVGLVPVVGDVIAATMGAYLIWEARNL GMPKWKIWRMVGNLGIDTALGAVPLVGDAFDFFFRSNTRNLRIIKKHLDKHHPGTLVIEQ
Sequences:
>Translated_140_residues MAPSSRNPDAIFDALIPDRTDPAALRKRVEMLEILLERGFVIPGINRAVGLDAIVGLVPVVGDVIAATMGAYLIWEARNL GMPKWKIWRMVGNLGIDTALGAVPLVGDAFDFFFRSNTRNLRIIKKHLDKHHPGTLVIEQ >Mature_139_residues APSSRNPDAIFDALIPDRTDPAALRKRVEMLEILLERGFVIPGINRAVGLDAIVGLVPVVGDVIAATMGAYLIWEARNLG MPKWKIWRMVGNLGIDTALGAVPLVGDAFDFFFRSNTRNLRIIKKHLDKHHPGTLVIEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15465; Mature: 15334
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPSSRNPDAIFDALIPDRTDPAALRKRVEMLEILLERGFVIPGINRAVGLDAIVGLVPV CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH VGDVIAATMGAYLIWEARNLGMPKWKIWRMVGNLGIDTALGAVPLVGDAFDFFFRSNTRN HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCC LRIIKKHLDKHHPGTLVIEQ HHHHHHHHHCCCCCEEEEEC >Mature Secondary Structure APSSRNPDAIFDALIPDRTDPAALRKRVEMLEILLERGFVIPGINRAVGLDAIVGLVPV CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH VGDVIAATMGAYLIWEARNLGMPKWKIWRMVGNLGIDTALGAVPLVGDAFDFFFRSNTRN HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCC LRIIKKHLDKHHPGTLVIEQ HHHHHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA