Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is pcaK [H]

Identifier: 103486995

GI number: 103486995

Start: 1574024

End: 1575583

Strand: Direct

Name: pcaK [H]

Synonym: Sala_1510

Alternate gene names: 103486995

Gene position: 1574024-1575583 (Clockwise)

Preceding gene: 103486994

Following gene: 103487007

Centisome position: 47.05

GC content: 63.01

Gene sequence:

>1560_bases
ATGGTAGATAATGGACGCAGCCCCTGGCTCTTCCTGATCGGGGTAACAGCGGTAACAATCGGCGTGGTGGCCCATATGCC
GATGTTCTGGATGGGGCGCGATATCGGTTTCCGCATGGCCGGAATGCCGATGGACGGCATGATGATCGCCGGTATGGCGC
TCATCGTCGCGGGGATCGGCGTGGCCGCATGGGGCTTGCTTCCGGCAAACCTCGCCCAACAGGTCGCTGCCGCTGACCGC
CTGTCGGTCTCGGCGCCCGAGGATGCTCCCCTGTCCGCAGCGCATTGGCGATTGATGGCAGCCCTGGTTGTCGCGCTCAT
CATCGACATCATGAAACCCGCGAGCCTCGGTTTCGTGATTCCCGGAATGATGGATGAATATGGCCTGTCGCGCGAAACCG
TTTCGCTCGTTCCCTTCGCGGCGCTGGCGGGAACGGTGACGGGATCGATCGTCTGGGGCGCCGTTGCCGATGTTTACGGC
CGCAAGGCGACCATATTGTTGTCGGCCGTAATGTTCGTGGGCACTTCGGTTTGCGGCACAATGCCGTCATTGGCTTGGAA
CATCGTCATGTGTTTCATGATGGGGGCTGCCGCAGGCGGGATGCTGCCGGTTACCTATGCCCTTCTTGCGGAGATGATGC
CCAGTCGCCACCGGGGCTGGAGCCTGGTGCTCGTGGGCGGGCTGGGCGCGGCCGGTGGCTACGTCGCTGCCAGCCTGGTT
GCCGCATGGCTGGAGCCGCTGCTGAGCTGGCGAATTCTTTGGCTCGTCAATTTGCCGAGCGGTCTTATCCTTGTCGCGCT
CGGCGTCTTCATTCCCGAGTCGGCCAAGTTTCTCGTGGCGCGCGGTCGGCACGAAGAAGCCCGGCGGATCATGGCGCGCT
TCGGTTCGAGCTTGCATATGGCTGACCGGGGACCGCCCCGCCCGCGCCGGGATTCGCTTCAGCGACCCGACCTTGCTGGC
AGCATGATGGCGCTGAACCTGACGGCCATCGCATGGAGTCTCGTGAATTTCGGCTTGTTGCTTTGGCTGCCAGCCGAACT
TGTGGCGCGCGGATACAGCATGACATCGTCGAGCCGCCTGCTTGCCGATTCCGCGCTTGTCGCCCTTCCCACCGTCGTTT
TCGTCGCCTGGATTTATCACGCCTGGAGCACGAAATTGTCGCTGTTTGCAGCATCGCTTGCAACGCTTGCGGGCCTTGGC
GGGATGCTCTGGTTCGCGCTGGCCGAAAACGCTTCGCCATTCCTGCCCGCGGCGCTGCTCATCATCGGCAGCAACGCCAT
CATTGCGATGCTGCTTCCCTACAGCGCCGAGAGTTTTCCGCTGAGGGTTCGCGGTCGCAACACCGGATGGGTCGCGGCAT
CCAGCAAACTGGGCGGCGTATGTGCGCAGGGACTCGCCATATTCGCCATCGTCCCGTCGCTGGCGGCAAGCATATTGACG
ATTATGCCCGTGATGGCGGCATCGCTCGTTCTGCTCGCCCGTTACGGCCGCGAAACGCGAGGGAGCGACCTGCGCGATCT
CGACCCGGAGGGACATGTCTTCGACAAGGCCGGGCTCTGA

Upstream 100 bases:

>100_bases
AGAAAAAGGAGGCGTGTCGCGAGTTCCCTGTCGACGTGGGCGCGCCATAATGACACGGTGATTCAGGCATGGTGCTGGCC
CTCAATTTTCCCGGGACGAT

Downstream 100 bases:

>100_bases
AAGATTGCGGTCGACGGAAATCGGCGACCGGACGACATATCGCCCCGGTCTGGACGCAAGGTCGTCCCTGCCACGAGGCA
CAGAAAGGCGGTCGCCCGGT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR
LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG
RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV
AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG
SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG
GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT
IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL

Sequences:

>Translated_519_residues
MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR
LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG
RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV
AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG
SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG
GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT
IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL
>Mature_519_residues
MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR
LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG
RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV
AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG
SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG
GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT
IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI24308167, Length=451, Percent_Identity=23.9467849223947, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI166197673, Length=345, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1788074, Length=257, Percent_Identity=28.4046692607004, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082159, Length=400, Percent_Identity=25.5, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1786229, Length=238, Percent_Identity=25.2100840336134, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI32564663, Length=406, Percent_Identity=24.6305418719212, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640198, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24640196, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24640200, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19922874, Length=253, Percent_Identity=26.8774703557312, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573097, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24668440, Length=338, Percent_Identity=23.9644970414201, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004746
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 54785; Mature: 54785

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIG
CCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHH
VAAWGLLPANLAQQVAAADRLSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
PGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYGRKATILLSAVMFVGTSVCGT
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
MPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHM
HHHHHHHHHHEEHHEEECCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEE
ADRGPPRPRRDSLQRPDLAGSMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLGGMLWFALAENASPFLPAALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
IIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT
HCCCCCEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIG
CCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHH
VAAWGLLPANLAQQVAAADRLSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
PGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYGRKATILLSAVMFVGTSVCGT
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
MPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHM
HHHHHHHHHHEEHHEEECCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEE
ADRGPPRPRRDSLQRPDLAGSMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLGGMLWFALAENASPFLPAALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
IIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT
HCCCCCEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8063101 [H]