| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486689
Identifier: 103486689
GI number: 103486689
Start: 1241820
End: 1243028
Strand: Reverse
Name: 103486689
Synonym: Sala_1201
Alternate gene names: NA
Gene position: 1243028-1241820 (Counterclockwise)
Preceding gene: 103486692
Following gene: 103486688
Centisome position: 37.16
GC content: 59.64
Gene sequence:
>1209_bases ATGAGCAAGGTTCTGGTGATCGGCGCAGGCGGCGTCGGTTCGGTCGCGGTGCACAAGATGGCGATGAACTCCGACATCTT TCCCGACATCACCCTCGCCAGCCGCCGCAAGTTCAAGTGCGACGCGATTGCCGGGTCGGTGAAGGCGCGTACCGGCGTCA CGATCAAGACCGCCGAGGTCGACGCCGACCATATCGACGCGACCGCGGCGCTGATCCGTCAGATTGGCGCCACGCACGTC GTCAATCTTGCGCTGCCTTATCAGGATCTGACGATAATGGAGGCGTGCCTTTCGACCGGCGCGCATTATCTCGACACCGC AAATTACGAACCGCGCGACGAGGCGAAGTTCGAATATCACTGGCAATGGGCCTATCACGACCGCTTCAAGGACGCGGGCC TGATGGCGCTGCTCGGCTCGGGCTTCGACCCCGGCGTGACGAGCGTGTTCACGACCTGGCTTCGCAAGCATCATTTCGAC CGCATCGACACGCTCGACATCCTCGACTGCAACGGCGGCGATCACGGCCAGCATTTCGCGACCAACTTCAACCCCGAAAT CAACATTCGTGAAGTCACCGCGGTCGCGCGCCACTGGGAAAATGGCGACTGGGTCGAAACGCCCCCGATGTCGGTGAAGC AGCAGTTCCATTTCGAAGGCGTGGGGCCGAAGAATATGTACCTCATGTATCATGAGGAGATCGAAAGCCTGAAAACGCAT TTGCCCGAAATCAAGCGCATCCGTTTCTGGATGACCTTTGGCGACGCTTATATCCAGCACCTTACCGTGCTCCAGAATGT CGGCATGACGCGGATCGATCCGGTGGTCTACGAGGGCAAGGAGATCGTTCCGCTCCAGTTCCTCAAAGCCGTGCTCCCCG AACCGGCGAGCCTTGGCGGGACGACGAAAGGCAAGACCAATATCGGCGTCATCGCGACCGGCCTTGGCAAGGATGGCAAG GAAAAGACGCTCTACCTCTACAATATCTGCGACCATGAGGATGCCTATGCAGAAACGGGCAATCAGGCGGTCAGCTACAC CACCGGCGTTCCCGCGATGATCGGCGCCGCAATGATGGTCACCGGTACGTGGGGCGGCGCGGGCGTCTTCAACATGGAAC AGATGGACCCCGATCCCTTCATGGACATGCTGATGAAACATGGTCTGCCGTGGCAGGTGAAGGAACTGGACGCGCCGCTC GATTTCTGA
Upstream 100 bases:
>100_bases GGGCGAGCGCAGGATCGGGGCTTTGCTGTATCATGGCTTCGTCCTATAGGGCCGGGCATACAAGACAAGGCGGCAACGGT CCGCGACAGGAGATTTTTCG
Downstream 100 bases:
>100_bases CGACCTGCCGCCGCTATCGTCATCCCCGCGAAGGCCGGGATCGCACCCCATGGGTTGGACATCTCGGCGAGATCCCGGCC TTTGCCGGGATGACGACATC
Product: saccharopine dehydrogenase
Products: L-lysine; 2-oxoglutarate; NADH; H+
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHV VNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFD RIDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGK EKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPL DF
Sequences:
>Translated_402_residues MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHV VNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFD RIDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGK EKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPL DF >Mature_401_residues SKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHVV NLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDR IDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTHL PEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGKE KTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLD F
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.5.1.7
Molecular weight: Translated: 44596; Mature: 44465
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEV CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCEEEEECC DADHIDATAALIRQIGATHVVNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYH CCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEE WQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDRIDTLDILDCNGGDHGQHFA EEEEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC TNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH CCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHEEECCCCCCCEEEEEHHHHHHHHHH LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGG CCHHHEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHCCCCHHCCC TTKGKTNIGVIATGLGKDGKEKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMV CCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCHHHHCCEEEE TGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLDF EECCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEHHCCCCCCC >Mature Secondary Structure SKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEV CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCEEEEECC DADHIDATAALIRQIGATHVVNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYH CCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEE WQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDRIDTLDILDCNGGDHGQHFA EEEEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC TNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH CCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHEEECCCCCCCEEEEEHHHHHHHHHH LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGG CCHHHEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHCCCCHHCCC TTKGKTNIGVIATGLGKDGKEKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMV CCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCHHHHCCEEEE TGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLDF EECCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N6-(L-1,3-dicarboxypropyl)-L-lysine; NAD+; H2O
Specific reaction: N6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-lysine + 2-oxoglutarate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA