Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486579

Identifier: 103486579

GI number: 103486579

Start: 1117927

End: 1119258

Strand: Reverse

Name: 103486579

Synonym: Sala_1090

Alternate gene names: NA

Gene position: 1119258-1117927 (Counterclockwise)

Preceding gene: 103486580

Following gene: 103486570

Centisome position: 33.46

GC content: 65.69

Gene sequence:

>1332_bases
ATGATCCGCCGCCGCATCGCCCGCTCATTCGTTGCCGTTCTGCTCACCTGCACGCCGCTCTTCGCTGCGGCACCGGCCCT
CGCGCATCAATCGCCCGAGATGGCGGCGGCGGCCGACACCGCTTTTGCGCGGCGCGCCGACCAGCTTGTCGACCTGATCG
CGGGGCGCATCGCCTTTGCCGACTATTTCGACGCCGGTTTCCAAAAAGCATTGCCCGAGGCGCAGTTCCGCGCGGTCACT
GCGAACCTGATCGCCCAATATGGTGCGCCGGTCGCGGTGGACGGCGCGACGTCGTCCAACGGCCTGTCGGGCACCGTCCG
CCTGCGCTTTGAAAAGGGCGTGGCGACCGTGCTACTCGACGTCGCAGCGGGGGCGGACGAAAAAGTCGTCGGGCTTCGGA
TCACCGACTTCACCATGGCGGACGACAGTTTCGACAAGGTCGCGGCCGAACTGGCCGCGCTGCCGGGTCACACCGGCTTT
CTCGTCGCCGAGCTCGACGGCGGCGGCATCAGAAAAATCGCAGCGGCGAACAGCGAGCGCCAGTTCGCAATCGGGTCGAC
CTTCAAACTCTATATATTGGACGAACTGGCGGCGCAGGTCGCCGCGGGCAAGCGCAGATGGTCCGACGTCGTGCCTTTGA
CGCACGCCAGCTTTTCGTCGGCGGGCACGGCCGGCTGGCCGAGGGATATGCCGGTGACGCTCCAGACGCTCGCCAACTGG
ATGATCTCGGTCAGCGATAATGGCGCGACCGACACGCTGATCCACCTGCTCGGCCGCGAGGCGATCGAGGCGCGGATGAA
GGCGGCGGGGCACAGCGACCCGTCGCGCAACATCCCCTTTCTGACCACGGTCGAGGCGTTCGCGCTCAAGGGCAATAATT
TCGAGCGCGAGCGCGCGGCCTTCGTCGGCGCGAGCGATGCCGATCAAAGAAGACTGCTCGATGTTAACGCCGACAAGATG
GTTCTGGCCAATGTTGACGGCGTCAGCTTTGCGGGCGGCCCGCGCTTCATCGACAGCCTCGAATGGTTCGCCAGCCCGTC
CGATGTTGCGCGGCTGATGATCGACCTGCGCGCCCGGCAATCACCGGAAGCGATGGCCGCGATGGCGATCAACAATGGCG
TCGGTCCGGCCGCCGCCGCCGAATGGTCATGGCTTGGCTACAAGGGCGGCTCGGAAACCGGCGTCCTGTCGATGAGCCTG
CTCGGCCAGCGCAAGGGCGATGACAAATATGTCGTCGTCACGGCCAGCTGGAACAATCCCGACGCGGCGGTCGCCACCGA
AACGATGGTCGCGCTGATCAAGCGCCTGCTGGCGCTTGCCGCCAAAGATTAG

Upstream 100 bases:

>100_bases
ATCCAGGCCAATGCCGCCAGCCTCGACGAGGCCGCGATCGACGCCTAGCGCCGATGATTCCGCCGTGGCGGAAGGCGCGC
GAAATGGGGAGAATGATACC

Downstream 100 bases:

>100_bases
AAGCGGGGATTCTCACCCAAGACTTTGTCGGCCAGTTGCATATTCTCGGTCCGAACCATGTCTGGAATCAGGATCGCATC
GATAATCCACCAAATACCCA

Product: putative beta-lactamase

Products: NA

Alternate protein names: Beta Lactamase-Related Protein; Lipoprotein LpqF; Beta-Lactamase Related Protein; Beta-Lactamase-Like Protein; Probale Secreted Protein; Beta-Lactamase Class A-Like Protein; LpqF Protein

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT
ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF
LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW
MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM
VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL
LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD

Sequences:

>Translated_443_residues
MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT
ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF
LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW
MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM
VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL
LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD
>Mature_443_residues
MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT
ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF
LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW
MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM
VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL
LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD

Specific function: Unknown

COG id: COG2367

COG function: function code V; Beta-lactamase class A

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46931; Mature: 46931

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYFDAGFQKALPEAQFRAVTANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLD
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEECCCEEEHHH
VAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGFLVAELDGGGIRKIAAANSER
HHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC
QFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW
EEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHEEEECCCCCCHHHHH
FVGASDADQRRLLDVNADKMVLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQ
EECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
SPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSLLGQRKGDDKYVVVTASWNNP
CCHHHHHHHHCCCCCCCHHCCCCEEECCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCC
DAAVATETMVALIKRLLALAAKD
CHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYFDAGFQKALPEAQFRAVTANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLD
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEECCCEEEHHH
VAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGFLVAELDGGGIRKIAAANSER
HHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC
QFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW
EEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHEEEECCCCCCHHHHH
FVGASDADQRRLLDVNADKMVLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQ
EECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
SPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSLLGQRKGDDKYVVVTASWNNP
CCHHHHHHHHCCCCCCCHHCCCCEEECCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCC
DAAVATETMVALIKRLLALAAKD
CHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA