| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yhaA [H]
Identifier: 103486430
GI number: 103486430
Start: 958282
End: 959598
Strand: Direct
Name: yhaA [H]
Synonym: Sala_0940
Alternate gene names: 103486430
Gene position: 958282-959598 (Clockwise)
Preceding gene: 103486429
Following gene: 103486432
Centisome position: 28.65
GC content: 65.98
Gene sequence:
>1317_bases ATGATGCGCGCTTTCTGGATGGGCGCGGCGGCGCTGGCGCTGGCGGTGCCGGCATCGGCACAGACGCTGCGCGGCGAGGT GCAGGCGCAGATGCCGTCGCTGATGGCGATTTATGACGATCTGCACGCCAATCCCGAACTCAGCTTCATGGAGGTGCGCT CCGCGGGGATATTGGCGGCCGAGGCGCGCAAGCTGGGGTTCGAGGTCACCGAAAAGGTTGGCGGCACCGGCGTCGTTGCG GTGATGAAGAACGGGCCCGGTCCGATCGTGATGGTGCGTGCCGACATGGACGCGCTGCCAGTTACCGAACAGACGGGGCT GCCTGGGGCGTCGAAGGTGCGCGTCACCACCGCCGAGGGCGTCGAAACGGGCGTGATGCACGCCTGCGGTCACGACACGC ACATGGCCGCCTGGGTCGGCGTGGCGCGGTTGATGGCGGCGAACAAGGATAAATGGTCGGGCACGCTGGTGATGATCGGC CAGCCCGCCGAGGAACGTGGTGCCGGCGCCCGGATGATGCTTGAGGACGGGCTGTATACGCGCTTCCCGAAGCCCGAATA TGTGCTGGCGTTCCACGATGCGGCACAGTTTCCCGCGGGCATGATCGGCTATGCGCCGGGCTATGCGCTCGCCAATGTCG ACAGCGTCGACATCCTTGTGAAGGGCGTCGGCGGCCATGGCGCCTATCCGCAGACGACAAAGGATCCGATCGTGCTGGCG AGCCGCATTGTCGGCGCGCTGCAAACGCTGGTGTCGCGCGAGATCAGCCCGCTCGACAGCGCGGTGGTGACGGTCGGCAG CTTTCACGCTGGCGCCAAACACAACATCATTTCGGACGAGGCACGGCTCCAGCTGACGGTGCGCAGCTATACCGACGCGG TGCGCGATCATCTGCTGGACGGCATCGCCCGCATCGCCAAGGGTGAGGCGATCGCGGCGGGAATGCCCGAGGACCGGATG CCCGTGGTGACGGTGCAGAAGGACGAATATACGCCGGCCACCTTCAACACGCCCGAGTTCACCGAAGACATGGCGACCTT TCTGAAGACCAGCTTCGGCGAAACGCGCGTCGTCAAGGTTCCGCCCGTGATGGGGGGTGAGGATTTCGGCCGCTTCGCGC GCGCGGACAAGGATATAAAGAGCCTGATCATCTGGGTCGGCGGCGTCCCGCAGGCCGAATTTGATGCGGCGAAGAAGGAA GGGCGGACGCTGCCCAGCCTCCACTCGCCCTTCTGGGCGCCCGACGCGCCAGCGGTGATTTCGACCGCGACCGAGGCGCT GACCGCGATGGCGATGAAGCTGATGGGGCAGCGATAG
Upstream 100 bases:
>100_bases TCGGCGACAATCGCTGGCGGCTGGTGCTGCCCGCGCCGGCTTATGAATCGCTGCTCGACGTGATCGAGCTGGTTCCGGCA AATTGATGGAGGAGAGAGGG
Downstream 100 bases:
>100_bases ACTGGGGGCTGGTTTCGTCCGGAAGCTGCCGCTCCGCCCCGGCACGGAGGAGCAATCGAAGCGCGGTGGAGGGGTCCTGA CCCTAGCAGTCAGTCTCCCT
Product: peptidase M20D, amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR
Sequences:
>Translated_438_residues MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR >Mature_438_residues MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR
Specific function: Required But Not Essential For Aminobenzoyl-Glutamate Utilization. May Participate In Hydrolysis Of Aminobenzoyl- Glutamate To Aminobenzoate, Either Alone Or In Combination With Abgb. [C]
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20A family [H]
Homologues:
Organism=Escherichia coli, GI87081880, Length=338, Percent_Identity=26.0355029585799, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787598, Length=376, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017439 - InterPro: IPR010168 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: NA
Molecular weight: Translated: 46576; Mature: 46576
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAA CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCEEHH EARKLGFEVTEKVGGTGVVAVMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEG HHHHCCHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC VETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIGQPAEERGAGARMMLEDGLYT CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCEEEEECCCCC RFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA CCCCCCEEEEECCHHCCCCCHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLD HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHH GIARIAKGEAIAAGMPEDRMPVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKV HHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC PPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKEGRTLPSLHSPFWAPDAPAVI CCCCCCHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH STATEALTAMAMKLMGQR HHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAA CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCEEHH EARKLGFEVTEKVGGTGVVAVMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEG HHHHCCHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC VETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIGQPAEERGAGARMMLEDGLYT CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCEEEEECCCCC RFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA CCCCCCEEEEECCHHCCCCCHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLD HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHH GIARIAKGEAIAAGMPEDRMPVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKV HHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC PPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKEGRTLPSLHSPFWAPDAPAVI CCCCCCHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH STATEALTAMAMKLMGQR HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]