Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486385

Identifier: 103486385

GI number: 103486385

Start: 904119

End: 904943

Strand: Direct

Name: 103486385

Synonym: Sala_0895

Alternate gene names: NA

Gene position: 904119-904943 (Clockwise)

Preceding gene: 103486384

Following gene: 103486387

Centisome position: 27.03

GC content: 61.94

Gene sequence:

>825_bases
ATGGCAAAGGATATTCTGGGCTACGCGGGCAAACGTGTCGTCGTCATGGGTTGCTTTTCGGGAACTGGCGAAGCTTGCGC
GCGATTGCTGGTGGAACTGGGCGCCGAGGTGCACGGCGCCGACATCAAGCCCTCGCCGGTCGGCCTTGCTTCCTTCACTG
AAGTCGATCTGAAAGACCCCGAGGCGATTGCCGCCGGTATCGCGAAGATCGGCGGCAAGATAGACGCCGTTTTCAACGTC
TCCGGCCTGCCACAGACCTTTCCGGGCGAGGATGTCATTACGGTCAACTTCCTGGGCATTCGCGCATGGACCGAAGGCTG
GATTCCGCACCTCAACCCAGGCGCCGCGATCGTATCCGTGTCGTCGCTCGGCGGCATGAAATGGCTGACCCGTCAGCCGC
TGCTGCGCGAACTCCTCGCCATTACCGATTTCGACGAAGCGCGGAAATGGTATCGCGAACGCGCCGAGGAGATCGGCGAT
CCCTATAGCCTTGCCAAGGAAGCGGTGAATACCTGGACCCAGGTTCGCGCCCCCGACCTGATCGGGCAGGACATCCGCAT
CAATTGCACGATGCCCAGCCCCATCGACACGCCGATGCTTGGCGAATTTCGCAAGGTCGCCGGGGATGCGGTGCTCAGCG
CCTTTGCCAAGGCAAAGGGACGCTATTCGACAGCCGAGGAACAGGCATTGCCGTTGATCCTGCTAAACAGCGATGCAGCA
CGCTTCATCAGCGGGGTGTGCCTGCCCGTCGACGCGGGCCTGGCTGGCGGACTGGCGACGGGCGTGCTCGACATTCAGAA
AATGATCGCCGAGGCGTCGGCTTGA

Upstream 100 bases:

>100_bases
CCCTGGAACTCCCCGATCGATTTTTGACACTATGTCAATGGCGCGTCTTGTTCGATTTCTATTTGATTTTCGAGAAAAAC
TAGAAGTGAGAGAGGGTGGT

Downstream 100 bases:

>100_bases
CCGGCGCGGGGTCTGCTGAACGTCAGTCCCTGACGCCCAGCATCATCGCGAGGCTGTGCGCCGCTGCGGCTTTCAGACTG
GCGTATCCGACGCGATCTTC

Product: 3-alpha-hydroxysteroid dehydrogenase

Products: NA

Alternate protein names: Short-Chain Dehydrogenase/Reductase SDR; NAD-Dependent Epimerase/Dehydratase; Oxidoreductase; Dehydrogenase/Reductase; 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase; Short-Chain Type Dehydrogenase/Reductase; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; Short Chain Dehydrogenase

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNV
SGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGD
PYSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA
RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA

Sequences:

>Translated_274_residues
MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNV
SGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGD
PYSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA
RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA
>Mature_273_residues
AKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNVS
GLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDP
YSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAAR
FISGVCLPVDAGLAGGLATGVLDIQKMIAEASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29035; Mature: 28904

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDP
CCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
EAIAAGIAKIGGKIDAVFNVSGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSV
HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCHHEEEE
SSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDPYSLAKEAVNTWTQVRAPDL
HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
IGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCHH
RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA
HHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDP
CCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
EAIAAGIAKIGGKIDAVFNVSGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSV
HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCHHEEEE
SSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDPYSLAKEAVNTWTQVRAPDL
HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
IGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCHH
RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA
HHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA