| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485678
Identifier: 103485678
GI number: 103485678
Start: 188026
End: 189534
Strand: Direct
Name: 103485678
Synonym: Sala_0182
Alternate gene names: NA
Gene position: 188026-189534 (Clockwise)
Preceding gene: 103485677
Following gene: 103485679
Centisome position: 5.62
GC content: 67.53
Gene sequence:
>1509_bases ATGACCCCCATGCGGATCATCATCATCGGCGGCGGGACGGCAGGCTGGATGGCCGCCGCCTGCTTCACCCGCTTCCTGCC TCCCGGCTGGTCGGTCACGCTGGTCGAATCGGACGCGATCGGCACCGTCGGCGTGGGCGAGGCGACGATCCCGCAGATCC GCCTGTTCAATCAGGCGCTCGGCATCGACGAGGACGAGTTCCTCACCGCGACGCAGGGCACGATCAAGCTCGGCATCGAA TTTGCGGACTGGACGCGCCCCGGCCACCGCTACATGCACGCCTTCGGCGCGATCGGGCGCGGGCTCGGCCTGCTCGAGTT CCAGCATTACTGGCTGCGCGCGCGCGCCGCCGGGGTCGCGGGTGAGCTGGGCACCTATTCGCTCAACGAAACGGCCGCGC ACGCGCGGCGGATGCAGCGCGGCGCCCCGCGCACCTCGCCGCACCTCGCCGAAATGCCCTATGCCTTTCACTTCGACGCC GCGCTTTACGCTGCTTACCTGCGCCGCCGCGCCGAAGCGGGCGGTGCGCAGCGGGTCGAGGGCAAGGTCGCCGACGTTCG CCTCGACGGCGACAGCGGCAATGTCGCGGGGGTGACGCTCGACGACGGGCGCCGCATCGACGGCGATCTCTTCATCGACT GTTCGGGTTTTCGCGGCCTGCTGATCGAGGGCGCGCTGGCGACGGGTTATGACGACTGGTCGCGCTGGCTGATCAATGAT CGCGCGATCGCGGTGCCCTGCGTGCACGGCGCCACGCCGCAGTTGCCGTGGACCGGCGCCACCGCGCGCGAGGCCGGCTG GCAATGGCGCATCCCGCTCCAGCATCGCATCGGCAACGGCTATGTCTATTCGTCGCATCATATTTCGGACGAAGACGCCG AACGGACGCTGCTTGCCCATCTCGACGGCGCGCCGCAGGCGCAGCCCAACCGGCTGCGCTTCGTCAGCGGCAAGCGGCGC AAGCTGTGGAACCGCAACGTCGTCGCGCTGGGGCTGGCGAGCGGCTTCATGGAGCCGCTCGAATCGACGAGCATCCATCT CGTCCAGTCGGGCATCTCGCGGCTTTTGAAGATGCTTCCTGTCGGCGTCGCCGACCCCGCGGTTGCCGCCGAATATAATC GCCAGAGCGATTTTGAATGGGAACGCATCCGCGACTTCCTCATCCTGCACTTCAAGGCGACCGAGCGGCGCGACACGCGC TATTGGCAAGACCGCGCCGCCATGCCGATTCCCGACACGCTCGCCGCGAAGATCGATCAGTTCCGCGCGCAGGGGCTTAT CTTTCGCGAGCATGAGGAATTGTTCACCGAATCGGGCTGGCTGCAGGTGCTCATCGGGCAGGGGATCGAACCCCGCGCCT GGCATCCCCTCGCCGACGGGATCGGTGAGGCCGAGCTCGCCAAATATATGGCGGGGATTTCGCTGATGATCGAACGCGAG GTGGCAGTCATGCAAAGTTACGACGACTTCCTTGCCGCGACGCGGCCCGCCGCGGGGGTCGCGGCATGA
Upstream 100 bases:
>100_bases CTGGCGGGCGCCTCGTTCAAGTTCTGATCCTCCCTGATGGGGGCGGCTGCGTCCAGCCGTCCCCATCATCTTGTTGCGTA AAGAGGCATTGGCCGATCAA
Downstream 100 bases:
>100_bases TGCGCCGCCTCGCCGCGTTCGCGCTGCTGCTCGCGCCGCTCCCCGTCGCGGCGGACGAGGCGGCGCTGCGCGTCCGCCCC GCAAACGACGAGATCATCTA
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 502; Mature: 501
Protein sequence:
>502_residues MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIE FADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDA ALYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRR KLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTR YWQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE VAVMQSYDDFLAATRPAAGVAA
Sequences:
>Translated_502_residues MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIE FADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDA ALYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRR KLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTR YWQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE VAVMQSYDDFLAATRPAAGVAA >Mature_501_residues TPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQALGIDEDEFLTATQGTIKLGIEF ADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVAGELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAA LYAAYLRRRAEAGGAQRVEGKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLINDR AIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAHLDGAPQAQPNRLRFVSGKRRK LWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLPVGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRY WQDRAAMPIPDTLAAKIDQFRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIEREV AVMQSYDDFLAATRPAAGVAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 55414; Mature: 55282
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQAL CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH GIDEDEFLTATQGTIKLGIEFADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVA CCCCHHEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC GELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAALYAAYLRRRAEAGGAQRVE CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCC GKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND CEEEEEEEECCCCCEEEEEECCCCEECCEEEEEECCCCCEEEECCHHCCCCHHHHHEECC RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAH CEEEEEEECCCCCCCCCCCCCHHHCCCEEECCHHHCCCCCEEEECCCCCCCHHHHHHHHH LDGAPQAQPNRLRFVSGKRRKLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLP CCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCC VGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRYWQDRAAMPIPDTLAAKIDQ CCCCCCHHHHHCCCCCCCCHHHHCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHH FRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE HHHCCCEEECHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEHHH VAVMQSYDDFLAATRPAAGVAA HHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TPMRIIIIGGGTAGWMAAACFTRFLPPGWSVTLVESDAIGTVGVGEATIPQIRLFNQAL CCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH GIDEDEFLTATQGTIKLGIEFADWTRPGHRYMHAFGAIGRGLGLLEFQHYWLRARAAGVA CCCCHHEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC GELGTYSLNETAAHARRMQRGAPRTSPHLAEMPYAFHFDAALYAAYLRRRAEAGGAQRVE CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCC GKVADVRLDGDSGNVAGVTLDDGRRIDGDLFIDCSGFRGLLIEGALATGYDDWSRWLIND CEEEEEEEECCCCCEEEEEECCCCEECCEEEEEECCCCCEEEECCHHCCCCHHHHHEECC RAIAVPCVHGATPQLPWTGATAREAGWQWRIPLQHRIGNGYVYSSHHISDEDAERTLLAH CEEEEEEECCCCCCCCCCCCCHHHCCCEEECCHHHCCCCCEEEECCCCCCCHHHHHHHHH LDGAPQAQPNRLRFVSGKRRKLWNRNVVALGLASGFMEPLESTSIHLVQSGISRLLKMLP CCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCC VGVADPAVAAEYNRQSDFEWERIRDFLILHFKATERRDTRYWQDRAAMPIPDTLAAKIDQ CCCCCCHHHHHCCCCCCCCHHHHCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHH FRAQGLIFREHEELFTESGWLQVLIGQGIEPRAWHPLADGIGEAELAKYMAGISLMIERE HHHCCCEEECHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEHHH VAVMQSYDDFLAATRPAAGVAA HHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]