Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is engB

Identifier: 103485501

GI number: 103485501

Start: 2549

End: 3208

Strand: Reverse

Name: engB

Synonym: Sala_0003

Alternate gene names: 103485501

Gene position: 3208-2549 (Counterclockwise)

Preceding gene: 103485502

Following gene: 103485500

Centisome position: 0.1

GC content: 65.0

Gene sequence:

>660_bases
GTGAGCGAGATCGAACTCGAACCCGGTGCGGATCCCGAACGGGCGGAGCGCGCGCGCAAGCTGTTTTCAGGCCCGATCGC
CTTCCTGAAATCGGCGCCCGCGCTTCAGCATCTGCCTGTGCCGTCGGTGCCGGAGATTGCCTTTGCGGGTCGATCGAACG
TCGGCAAATCGTCGCTGCTCAACGCGCTGACCAACCGCAACGGCCTCGCGCGCACCTCGGTCACGCCGGGACGCACGCAG
GAACTCAACTATTTCGACGTGGGCGAACCGCCGGTGTTCCGCCTCGTCGACATGCCCGGTTACGGCTTTGCCAAGGCGCC
GAAGGATGTCGTCAGGAAATGGCGCTTCCTGATCAACGATTACCTCCGCGGACGGCAGGTGCTGAAACGCACATTGGTGC
TGATCGACAGCCGCCACGGCATCAAGGATGTCGACCGCGATGTGCTCGAAATGCTCGACACCGCGGCGGTGAGCTACCGC
CTCGTGCTCACCAAGGCCGACAAGATCAAGGCGAGCGCGCTCGCCGACGTCCATGCCGCGACCGAGGCCGAGGCGCGCAA
ACACCCCGCCGCGCACCCCGAGGTGATTGCGACGAGCAGCGAGAAAGGCATGGGGATCGCCGAACTGCGCACCGCGGTGC
TGGAGGCGGTGGAATTATAG

Upstream 100 bases:

>100_bases
CGGGCCTGCTGCTTTACTGGATCACCAACAATATCCTGTCGATCGGGCAGCAGCAGTGGATGTATCGCAAGTTCCCGGCG
CTGAAGGCGGCGCCGGCGAA

Downstream 100 bases:

>100_bases
ATGATCCTCTCCCCTTGCGGGAGAGGATGGTGAAGGTTGCGGACTGGTCCGCTACCGTAACCTGGAGAGGGGGAAGCGGC
CCGCCGGGCCGCGGCGAGCC

Product: ribosome biogenesis GTP-binding protein YsxC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQ
ELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYR
LVLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL

Sequences:

>Translated_219_residues
MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQ
ELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYR
LVLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL
>Mature_218_residues
SEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLLNALTNRNGLARTSVTPGRTQE
LNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLINDYLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRL
VLTKADKIKASALADVHAATEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL

Specific function: Necessary for normal cell division and for the maintenance of normal septation

COG id: COG0218

COG function: function code R; Predicted GTPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain

Homologues:

Organism=Homo sapiens, GI56549685, Length=212, Percent_Identity=38.6792452830189, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI56549687, Length=138, Percent_Identity=37.6811594202899, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI145693205, Length=184, Percent_Identity=44.5652173913043, Blast_Score=147, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6320543, Length=192, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ENGB_SPHAL (Q1GN74)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_615062.1
- ProteinModelPortal:   Q1GN74
- SMR:   Q1GN74
- GeneID:   4083134
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_0003
- NMPDR:   fig|317655.9.peg.3
- HOGENOM:   HBG447097
- OMA:   RTQELIF
- ProtClustDB:   PRK00454
- BioCyc:   SALA317655:SALA_0003-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_00321
- InterPro:   IPR019987
- InterPro:   IPR002917
- TIGRFAMs:   TIGR03598

Pfam domain/function: PF01926 MMR_HSR1

EC number: NA

Molecular weight: Translated: 23944; Mature: 23813

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCCCCHHHHH
NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND
HHHHCCCCCEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKIKASALADVHAA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH
TEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL
HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCCCCHHHHH
NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND
HHHHCCCCCEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKIKASALADVHAA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH
TEAEARKHPAAHPEVIATSSEKGMGIAELRTAVLEAVEL
HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA