Definition Salmonella bongori NCTC 12419, complete genome.
Accession NC_015761
Length 4,460,105
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 304587..304632  attL    TTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT  N/A  Click
2 complement(316143..316430)  putative prophage protein; SBG_0270  N/A  Click
3 complement(316576..317694)  putative prophage protein; SBG_0271  N/A  Click
4 318062..318367  PHAGE_Vibrio_VP882: phage-related tail protein; SBG_0272; phage(gi126010872)  4e-11  Click
5 318787..319434  putative prophage protein; SBG_0273  N/A  Click
6 319435..319653  putative prophage protein; SBG_0274  N/A  Click
7 319836..320852  putative prophage protein; SBG_0275  N/A  Click
8 320927..321172  putative prophage protein; SBG_0276  N/A  Click
9 321274..322092  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; SBG_0277; phage(gi414086954)  2e-44  Click
10 322105..322605  putative prophage protein; SBG_0278  N/A  Click
11 complement(322656..322784)  putative prophage protein; SBG_0279  N/A  Click
12 323231..323572  putative prophage protein; SBG_0280  N/A  Click
13 323688..324521  PHAGE_Marino_P12026: putative DNA modification methylase; SBG_0281; phage(gi399528347)  5e-10  Click
14 324622..325269  putative prophage protein; SBG_0282  N/A  Click
15 325283..326335  PHAGE_Entero_phiEco32: Appr-1-p processing enzyme family; SBG_0283; phage(gi167583592)  7e-18  Click
16 complement(326373..327728)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; SBG_0284; phage(gi16130540)  5e-25  Click
17 327860..327905  attR    TTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT  N/A  Click
Region 2, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1005964..1006623)  PHAGE_Camelp_virus: CMLV006; SBG_0886; phage(gi18640240)  4e-11  Click
2 1007030..1007114  tRNA  N/A  Click
3 1007057..1007134  attL    CCGGTCTTGAAAACCGGCGACCCGAAAGGGTTCCAGAGTTCGAATCTCTGCGCTTCCGCCAGATTAAACAAGGGGTTA  N/A  Click
4 complement(1007223..1008242)  PHAGE_Salmon_ST64B: Integrase protein; SBG_0887; phage(gi23505472)  4e-96  Click
5 complement(1008243..1008467)  PHAGE_Pectob_ZF40: hypothetical protein; SBG_0888; phage(gi422936643)  1e-13  Click
6 complement(1009155..1009961)  putative phage-like protein; SBG_0889  N/A  Click
7 complement(1009958..1010806)  putative phage-like protein; SBG_0890  N/A  Click
8 complement(1010978..1011445)  PHAGE_Entero_mEp237: prophage repressor; SBG_0891; phage(gi435439304)  2e-71  Click
9 1011652..1012026  PHAGE_Gifsy_1: probable regulatory protein; transcriptional activator; lambda CII analog; SBG_0892; phage(gi169257256)  4e-66  Click
10 1012118..1013023  PHAGE_Entero_lambda: DNA replication protein; SBG_0893; phage(gi9626295)  4e-96  Click
11 1013020..1013712  PHAGE_Entero_mEp237: DNA replication protein P; SBG_0894; phage(gi435439308)  2e-78  Click
12 1013726..1013983  PHAGE_Salmon_SPN1S: hypothetical protein; SBG_0895; phage(gi374531241)  2e-39  Click
13 1013980..1014891  PHAGE_Salmon_vB_SosS_Oslo: EaA protein; SBG_0896; phage(gi399528793)  5e-37  Click
14 1014945..1015319  putative phage-like protein; SBG_0897  N/A  Click
15 1015319..1015426  putative phage-like protein; SBG_0898  N/A  Click
16 complement(1015606..1016037)  PHAGE_Escher_TL_2011b: hypothetical protein; SBG_0898a; phage(gi418487671)  2e-29  Click
17 1016136..1016327  PHAGE_Escher_TL_2011b: hypothetical protein; SBG_0899; phage(gi418487672)  2e-18  Click
18 1016401..1017228  PHAGE_Salmon_vB_SosS_Oslo: putative antirepressor protein Ant; SBG_0900; phage(gi399528777)  8e-58  Click
19 1017301..1018047  PHAGE_Entero_P1: Ant2; SBG_0901; phage(gi46401670)  4e-25  Click
20 1018233..1018466  PHAGE_Entero_mEp237: hypothetical protein; SBG_0902; phage(gi435439313)  4e-26  Click
21 1018583..1018831  PHAGE_Entero_mEp237: hypothetical protein; SBG_0903; phage(gi435439314)  5e-40  Click
22 1018866..1019468  PHAGE_Entero_mEp237: hypothetical protein; SBG_0904; phage(gi435439315)  5e-98  Click
23 1019390..1019674  PHAGE_Entero_mEp237: hypothetical protein; SBG_0904A; phage(gi435439316)  1e-19  Click
24 1019857..1020528  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; SBG_0905; phage(gi169257244)  6e-113  Click
25 1020525..1020800  putative phage-related membrane protein; SBG_0906  N/A  Click
26 1020797..1021369  PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; SBG_0907; phage(gi169257243)  1e-56  Click
27 complement(1021511..1022011)  PHAGE_Entero_P1: Doc; SBG_0908; phage(gi46401725)  2e-05  Click
28 1023134..1023559  putative pertussis-like toxin; SBG_0911  N/A  Click
29 1023585..1024331  putative pertussis toxin s1 subunit; SBG_0912  N/A  Click
30 1024569..1024958  PHAGE_Entero_mEp390: putative holin; SBG_0913; phage(gi428782712)  3e-46  Click
31 1024945..1025226  PHAGE_Entero_mEp390: putative holin; SBG_0914; phage(gi428782713)  9e-40  Click
32 1025226..1025840  PHAGE_Salmon_1: putative bacteriophage endolysin; SBG_0915; phage(gi169257182)  1e-111  Click
33 1025837..1026379  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; SBG_0916; phage(gi16765210)  3e-19  Click
34 1026641..1027171  PHAGE_Salmon_SE1: hypothetical protein SE1_gp47; SBG_0917; phage(gi219681238)  3e-84  Click
35 1027571..1027981  putative phage-like protein; SBG_0918  N/A  Click
36 1028070..1028375  PHAGE_Salmon_ST64B: hypothetical protein sb55; SBG_0919; phage(gi23505499)  1e-21  Click
37 1028478..1028828  PHAGE_Salmon_ST64B: hypothetical protein sb56; SBG_0920; phage(gi23505500)  9e-51  Click
38 1028853..1029170  putative phage-like protein; SBG_0921  N/A  Click
39 1029172..1030284  putative phage-like protein; SBG_0922  N/A  Click
40 1030341..1030499  putative phage-like protein; SBG_0923  N/A  Click
41 1030656..1031234  PHAGE_Entero_2008: hypothetical protein YYZ_gp72; SBG_0924; phage(gi209427795)  8e-21  Click
42 1036199..1036276  attR    CCGGTCTTGAAAACCGGCGACCCGAAAGGGTTCCAGAGTTCGAATCTCTGCGCTTCCGCCAGATTAAACAAGGGGTTA  N/A  Click
Region 3, total : 47 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3078219..3079232)  PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; SBG_2802; phage(gi16130960)  0.0  Click
2 3079470..3079685  30S ribosomal subunit protein S21; SBG_2803  N/A  Click
3 3079989..3081734  PHAGE_Helico_phiHP33: DNA primase; SBG_2804; phage(gi371671350)  7e-45  Click
4 3081749..3083731  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; SBG_2805; phage(gi356870821)  2e-36  Click
5 complement(3083876..3084382)  G/U mismatch-specific DNA glycosylase; SBG_2806  N/A  Click
6 3084508..3084580  tRNA  N/A  Click
7 3084538..3084567  attL    ACTCATAATCGCTTGGTCGCTGGTTCAAGT  N/A  Click
8 complement(3084741..3084959)  PHAGE_Entero_PsP3: Pag; SBG_2806A; phage(gi41057379)  3e-28  Click
9 complement(3085026..3086195)  PHAGE_Entero_PsP3: gp26; SBG_2807; phage(gi41057378)  0.0  Click
10 complement(3086192..3086677)  PHAGE_Entero_PsP3: gp25; SBG_2808; phage(gi41057377)  1e-87  Click
11 complement(3086692..3089133)  PHAGE_Entero_PsP3: gp24; SBG_2809; phage(gi41057376)  0.0  Click
12 complement(3089126..3089245)  PHAGE_Entero_PsP3: gp23.5; SBG_2809A; phage(gi41057394)  2e-17  Click
13 complement(3089278..3089613)  PHAGE_Entero_PsP3: gp23; SBG_2810; phage(gi41057375)  3e-55  Click
14 complement(3089676..3090194)  PHAGE_Entero_PsP3: gp22; SBG_2811; phage(gi41057374)  1e-95  Click
15 complement(3090210..3091397)  PHAGE_Entero_PsP3: gp21; SBG_2812; phage(gi41057373)  0.0  Click
16 complement(3091532..3092080)  PHAGE_Entero_PsP3: gp20; SBG_2813; phage(gi41057372)  5e-102  Click
17 complement(3092093..3094069)  PHAGE_Entero_PsP3: gp19; SBG_2814; phage(gi41057371)  0.0  Click
18 complement(3094080..3094610)  PHAGE_Entero_PsP3: gp18; p2; phage i homolog; tail protein; SBG_2815(gi41057370)  2e-102  Click
19 complement(3094603..3095511)  PHAGE_Entero_PsP3: gp17; SBG_2816; phage(gi41057369)  2e-162  Click
20 complement(3095518..3095865)  PHAGE_Entero_PsP3: gp16; SBG_2817; phage(gi41057368)  2e-58  Click
21 complement(3095862..3096503)  PHAGE_Entero_PsP3: gp15; SBG_2818; phage(gi41057367)  1e-118  Click
22 complement(3096572..3097021)  PHAGE_Entero_PsP3: gp14; SBG_2819; phage(gi41057366)  3e-78  Click
23 complement(3097014..3097481)  PHAGE_Entero_PsP3: gp13; SBG_2821; phage(gi41057365)  3e-86  Click
24 complement(3097444..3097734)  PHAGE_Entero_PsP3: gp12; SBG_2821A; phage(gi41057364)  3e-50  Click
25 complement(3097589..3098002)  PHAGE_Entero_PsP3: gp11; SBG_2822; phage(gi41057363)  3e-68  Click
26 complement(3097999..3098496)  PHAGE_Entero_PsP3: gp10; SBG_2823; phage(gi41057362)  8e-92  Click
27 complement(3098483..3098779)  PHAGE_Entero_PsP3: gp9; SBG_2824; phage(gi41057361)  1e-49  Click
28 complement(3098783..3098986)  PHAGE_Entero_PsP3: gp8; SBG_2825; phage(gi41057360)  4e-32  Click
29 complement(3098986..3099492)  PHAGE_Entero_PsP3: gp7; SBG_2826; phage(gi41057359)  9e-94  Click
30 complement(3099586..3100335)  PHAGE_Entero_PsP3: gp6; SBG_2827; phage(gi41057358)  7e-130  Click
31 complement(3100339..3101406)  PHAGE_Entero_PsP3: gp5; SBG_2828; phage(gi41057357)  2e-174  Click
32 complement(3101482..3102336)  PHAGE_Entero_PsP3: gp4; SBG_2829; phage(gi41057356)  5e-158  Click
33 3102502..3104271  PHAGE_Entero_PsP3: gp3; SBG_2830; phage(gi41057355)  0.0  Click
34 3104271..3105317  PHAGE_Entero_PsP3: gp1; SBG_2831; phage(gi41057353)  0.0  Click
35 3105395..3106399  putative phage-like protein; SBG_2832  N/A  Click
36 complement(3106779..3107327)  putative phage-like protein; SBG_2833  N/A  Click
37 complement(3107438..3108169)  PHAGE_Vibrio_VHML: ORF47; SBG_2834; phage(gi27311214)  3e-54  Click
38 complement(3108252..3108692)  PHAGE_Entero_PsP3: TumB; SBG_2835; phage(gi41057390)  7e-18  Click
39 complement(3108810..3111029)  PHAGE_Entero_PsP3: gp36; SBG_2836; phage(gi41057388)  0.0  Click
40 complement(3111152..3111529)  PHAGE_Entero_PsP3: gp35; SBG_2837; phage(gi41057387)  7e-67  Click
41 complement(3111670..3111894)  PHAGE_Entero_PsP3: gp34; SBG_2838; phage(gi41057386)  1e-37  Click
42 complement(3111894..3112121)  PHAGE_Entero_PsP3: gp33; SBG_2839; phage(gi41057385)  9e-24  Click
43 complement(3112191..3112391)  hypothetical protein; SBG_2840  N/A  Click
44 complement(3112378..3112605)  PHAGE_Entero_PsP3: gp32; SBG_2841; phage(gi41057384)  2e-21  Click
45 complement(3112613..3113122)  PHAGE_Entero_PsP3: gp31; SBG_2842; phage(gi41057383)  3e-74  Click
46 complement(3113153..3113416)  PHAGE_Erwini_ENT90: hypothetical protein; SBG_2843; phage(gi431810982)  3e-34  Click
47 3113547..3114125  PHAGE_Entero_PsP3: CI; SBG_2844; phage(gi41057393)  1e-19  Click
48 3114125..3115162  PHAGE_Entero_PsP3: gp27; SBG_2845; phage(gi41057380)  2e-100  Click
49 3115234..3115263  attR    ACTCATAATCGCTTGGTCGCTGGTTCAAGT  N/A  Click
50 complement(3115400..3115735)  PHAGE_Bordet_1: Bbp28; SBG_2846; phage(gi41179389)  3e-09  Click