Definition | Salmonella bongori NCTC 12419, complete genome. |
---|---|
Accession | NC_015761 |
Length | 4,460,105 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 15 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 304587..304632 | attL TTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT | N/A | Click |
2 | complement(316143..316430) | putative prophage protein; SBG_0270 | N/A | Click |
3 | complement(316576..317694) | putative prophage protein; SBG_0271 | N/A | Click |
4 | 318062..318367 | PHAGE_Vibrio_VP882: phage-related tail protein; SBG_0272; phage(gi126010872) | 4e-11 | Click |
5 | 318787..319434 | putative prophage protein; SBG_0273 | N/A | Click |
6 | 319435..319653 | putative prophage protein; SBG_0274 | N/A | Click |
7 | 319836..320852 | putative prophage protein; SBG_0275 | N/A | Click |
8 | 320927..321172 | putative prophage protein; SBG_0276 | N/A | Click |
9 | 321274..322092 | PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; SBG_0277; phage(gi414086954) | 2e-44 | Click |
10 | 322105..322605 | putative prophage protein; SBG_0278 | N/A | Click |
11 | complement(322656..322784) | putative prophage protein; SBG_0279 | N/A | Click |
12 | 323231..323572 | putative prophage protein; SBG_0280 | N/A | Click |
13 | 323688..324521 | PHAGE_Marino_P12026: putative DNA modification methylase; SBG_0281; phage(gi399528347) | 5e-10 | Click |
14 | 324622..325269 | putative prophage protein; SBG_0282 | N/A | Click |
15 | 325283..326335 | PHAGE_Entero_phiEco32: Appr-1-p processing enzyme family; SBG_0283; phage(gi167583592) | 7e-18 | Click |
16 | complement(326373..327728) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; SBG_0284; phage(gi16130540) | 5e-25 | Click |
17 | 327860..327905 | attR TTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT | N/A | Click |
Region 2, total : 39 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1005964..1006623) | PHAGE_Camelp_virus: CMLV006; SBG_0886; phage(gi18640240) | 4e-11 | Click |
2 | 1007030..1007114 | tRNA | N/A | Click |
3 | 1007057..1007134 | attL CCGGTCTTGAAAACCGGCGACCCGAAAGGGTTCCAGAGTTCGAATCTCTGCGCTTCCGCCAGATTAAACAAGGGGTTA | N/A | Click |
4 | complement(1007223..1008242) | PHAGE_Salmon_ST64B: Integrase protein; SBG_0887; phage(gi23505472) | 4e-96 | Click |
5 | complement(1008243..1008467) | PHAGE_Pectob_ZF40: hypothetical protein; SBG_0888; phage(gi422936643) | 1e-13 | Click |
6 | complement(1009155..1009961) | putative phage-like protein; SBG_0889 | N/A | Click |
7 | complement(1009958..1010806) | putative phage-like protein; SBG_0890 | N/A | Click |
8 | complement(1010978..1011445) | PHAGE_Entero_mEp237: prophage repressor; SBG_0891; phage(gi435439304) | 2e-71 | Click |
9 | 1011652..1012026 | PHAGE_Gifsy_1: probable regulatory protein; transcriptional activator; lambda CII analog; SBG_0892; phage(gi169257256) | 4e-66 | Click |
10 | 1012118..1013023 | PHAGE_Entero_lambda: DNA replication protein; SBG_0893; phage(gi9626295) | 4e-96 | Click |
11 | 1013020..1013712 | PHAGE_Entero_mEp237: DNA replication protein P; SBG_0894; phage(gi435439308) | 2e-78 | Click |
12 | 1013726..1013983 | PHAGE_Salmon_SPN1S: hypothetical protein; SBG_0895; phage(gi374531241) | 2e-39 | Click |
13 | 1013980..1014891 | PHAGE_Salmon_vB_SosS_Oslo: EaA protein; SBG_0896; phage(gi399528793) | 5e-37 | Click |
14 | 1014945..1015319 | putative phage-like protein; SBG_0897 | N/A | Click |
15 | 1015319..1015426 | putative phage-like protein; SBG_0898 | N/A | Click |
16 | complement(1015606..1016037) | PHAGE_Escher_TL_2011b: hypothetical protein; SBG_0898a; phage(gi418487671) | 2e-29 | Click |
17 | 1016136..1016327 | PHAGE_Escher_TL_2011b: hypothetical protein; SBG_0899; phage(gi418487672) | 2e-18 | Click |
18 | 1016401..1017228 | PHAGE_Salmon_vB_SosS_Oslo: putative antirepressor protein Ant; SBG_0900; phage(gi399528777) | 8e-58 | Click |
19 | 1017301..1018047 | PHAGE_Entero_P1: Ant2; SBG_0901; phage(gi46401670) | 4e-25 | Click |
20 | 1018233..1018466 | PHAGE_Entero_mEp237: hypothetical protein; SBG_0902; phage(gi435439313) | 4e-26 | Click |
21 | 1018583..1018831 | PHAGE_Entero_mEp237: hypothetical protein; SBG_0903; phage(gi435439314) | 5e-40 | Click |
22 | 1018866..1019468 | PHAGE_Entero_mEp237: hypothetical protein; SBG_0904; phage(gi435439315) | 5e-98 | Click |
23 | 1019390..1019674 | PHAGE_Entero_mEp237: hypothetical protein; SBG_0904A; phage(gi435439316) | 1e-19 | Click |
24 | 1019857..1020528 | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; SBG_0905; phage(gi169257244) | 6e-113 | Click |
25 | 1020525..1020800 | putative phage-related membrane protein; SBG_0906 | N/A | Click |
26 | 1020797..1021369 | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; SBG_0907; phage(gi169257243) | 1e-56 | Click |
27 | complement(1021511..1022011) | PHAGE_Entero_P1: Doc; SBG_0908; phage(gi46401725) | 2e-05 | Click |
28 | 1023134..1023559 | putative pertussis-like toxin; SBG_0911 | N/A | Click |
29 | 1023585..1024331 | putative pertussis toxin s1 subunit; SBG_0912 | N/A | Click |
30 | 1024569..1024958 | PHAGE_Entero_mEp390: putative holin; SBG_0913; phage(gi428782712) | 3e-46 | Click |
31 | 1024945..1025226 | PHAGE_Entero_mEp390: putative holin; SBG_0914; phage(gi428782713) | 9e-40 | Click |
32 | 1025226..1025840 | PHAGE_Salmon_1: putative bacteriophage endolysin; SBG_0915; phage(gi169257182) | 1e-111 | Click |
33 | 1025837..1026379 | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; SBG_0916; phage(gi16765210) | 3e-19 | Click |
34 | 1026641..1027171 | PHAGE_Salmon_SE1: hypothetical protein SE1_gp47; SBG_0917; phage(gi219681238) | 3e-84 | Click |
35 | 1027571..1027981 | putative phage-like protein; SBG_0918 | N/A | Click |
36 | 1028070..1028375 | PHAGE_Salmon_ST64B: hypothetical protein sb55; SBG_0919; phage(gi23505499) | 1e-21 | Click |
37 | 1028478..1028828 | PHAGE_Salmon_ST64B: hypothetical protein sb56; SBG_0920; phage(gi23505500) | 9e-51 | Click |
38 | 1028853..1029170 | putative phage-like protein; SBG_0921 | N/A | Click |
39 | 1029172..1030284 | putative phage-like protein; SBG_0922 | N/A | Click |
40 | 1030341..1030499 | putative phage-like protein; SBG_0923 | N/A | Click |
41 | 1030656..1031234 | PHAGE_Entero_2008: hypothetical protein YYZ_gp72; SBG_0924; phage(gi209427795) | 8e-21 | Click |
42 | 1036199..1036276 | attR CCGGTCTTGAAAACCGGCGACCCGAAAGGGTTCCAGAGTTCGAATCTCTGCGCTTCCGCCAGATTAAACAAGGGGTTA | N/A | Click |
Region 3, total : 47 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(3078219..3079232) | PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; SBG_2802; phage(gi16130960) | 0.0 | Click |
2 | 3079470..3079685 | 30S ribosomal subunit protein S21; SBG_2803 | N/A | Click |
3 | 3079989..3081734 | PHAGE_Helico_phiHP33: DNA primase; SBG_2804; phage(gi371671350) | 7e-45 | Click |
4 | 3081749..3083731 | PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; SBG_2805; phage(gi356870821) | 2e-36 | Click |
5 | complement(3083876..3084382) | G/U mismatch-specific DNA glycosylase; SBG_2806 | N/A | Click |
6 | 3084508..3084580 | tRNA | N/A | Click |
7 | 3084538..3084567 | attL ACTCATAATCGCTTGGTCGCTGGTTCAAGT | N/A | Click |
8 | complement(3084741..3084959) | PHAGE_Entero_PsP3: Pag; SBG_2806A; phage(gi41057379) | 3e-28 | Click |
9 | complement(3085026..3086195) | PHAGE_Entero_PsP3: gp26; SBG_2807; phage(gi41057378) | 0.0 | Click |
10 | complement(3086192..3086677) | PHAGE_Entero_PsP3: gp25; SBG_2808; phage(gi41057377) | 1e-87 | Click |
11 | complement(3086692..3089133) | PHAGE_Entero_PsP3: gp24; SBG_2809; phage(gi41057376) | 0.0 | Click |
12 | complement(3089126..3089245) | PHAGE_Entero_PsP3: gp23.5; SBG_2809A; phage(gi41057394) | 2e-17 | Click |
13 | complement(3089278..3089613) | PHAGE_Entero_PsP3: gp23; SBG_2810; phage(gi41057375) | 3e-55 | Click |
14 | complement(3089676..3090194) | PHAGE_Entero_PsP3: gp22; SBG_2811; phage(gi41057374) | 1e-95 | Click |
15 | complement(3090210..3091397) | PHAGE_Entero_PsP3: gp21; SBG_2812; phage(gi41057373) | 0.0 | Click |
16 | complement(3091532..3092080) | PHAGE_Entero_PsP3: gp20; SBG_2813; phage(gi41057372) | 5e-102 | Click |
17 | complement(3092093..3094069) | PHAGE_Entero_PsP3: gp19; SBG_2814; phage(gi41057371) | 0.0 | Click |
18 | complement(3094080..3094610) | PHAGE_Entero_PsP3: gp18; p2; phage i homolog; tail protein; SBG_2815(gi41057370) | 2e-102 | Click |
19 | complement(3094603..3095511) | PHAGE_Entero_PsP3: gp17; SBG_2816; phage(gi41057369) | 2e-162 | Click |
20 | complement(3095518..3095865) | PHAGE_Entero_PsP3: gp16; SBG_2817; phage(gi41057368) | 2e-58 | Click |
21 | complement(3095862..3096503) | PHAGE_Entero_PsP3: gp15; SBG_2818; phage(gi41057367) | 1e-118 | Click |
22 | complement(3096572..3097021) | PHAGE_Entero_PsP3: gp14; SBG_2819; phage(gi41057366) | 3e-78 | Click |
23 | complement(3097014..3097481) | PHAGE_Entero_PsP3: gp13; SBG_2821; phage(gi41057365) | 3e-86 | Click |
24 | complement(3097444..3097734) | PHAGE_Entero_PsP3: gp12; SBG_2821A; phage(gi41057364) | 3e-50 | Click |
25 | complement(3097589..3098002) | PHAGE_Entero_PsP3: gp11; SBG_2822; phage(gi41057363) | 3e-68 | Click |
26 | complement(3097999..3098496) | PHAGE_Entero_PsP3: gp10; SBG_2823; phage(gi41057362) | 8e-92 | Click |
27 | complement(3098483..3098779) | PHAGE_Entero_PsP3: gp9; SBG_2824; phage(gi41057361) | 1e-49 | Click |
28 | complement(3098783..3098986) | PHAGE_Entero_PsP3: gp8; SBG_2825; phage(gi41057360) | 4e-32 | Click |
29 | complement(3098986..3099492) | PHAGE_Entero_PsP3: gp7; SBG_2826; phage(gi41057359) | 9e-94 | Click |
30 | complement(3099586..3100335) | PHAGE_Entero_PsP3: gp6; SBG_2827; phage(gi41057358) | 7e-130 | Click |
31 | complement(3100339..3101406) | PHAGE_Entero_PsP3: gp5; SBG_2828; phage(gi41057357) | 2e-174 | Click |
32 | complement(3101482..3102336) | PHAGE_Entero_PsP3: gp4; SBG_2829; phage(gi41057356) | 5e-158 | Click |
33 | 3102502..3104271 | PHAGE_Entero_PsP3: gp3; SBG_2830; phage(gi41057355) | 0.0 | Click |
34 | 3104271..3105317 | PHAGE_Entero_PsP3: gp1; SBG_2831; phage(gi41057353) | 0.0 | Click |
35 | 3105395..3106399 | putative phage-like protein; SBG_2832 | N/A | Click |
36 | complement(3106779..3107327) | putative phage-like protein; SBG_2833 | N/A | Click |
37 | complement(3107438..3108169) | PHAGE_Vibrio_VHML: ORF47; SBG_2834; phage(gi27311214) | 3e-54 | Click |
38 | complement(3108252..3108692) | PHAGE_Entero_PsP3: TumB; SBG_2835; phage(gi41057390) | 7e-18 | Click |
39 | complement(3108810..3111029) | PHAGE_Entero_PsP3: gp36; SBG_2836; phage(gi41057388) | 0.0 | Click |
40 | complement(3111152..3111529) | PHAGE_Entero_PsP3: gp35; SBG_2837; phage(gi41057387) | 7e-67 | Click |
41 | complement(3111670..3111894) | PHAGE_Entero_PsP3: gp34; SBG_2838; phage(gi41057386) | 1e-37 | Click |
42 | complement(3111894..3112121) | PHAGE_Entero_PsP3: gp33; SBG_2839; phage(gi41057385) | 9e-24 | Click |
43 | complement(3112191..3112391) | hypothetical protein; SBG_2840 | N/A | Click |
44 | complement(3112378..3112605) | PHAGE_Entero_PsP3: gp32; SBG_2841; phage(gi41057384) | 2e-21 | Click |
45 | complement(3112613..3113122) | PHAGE_Entero_PsP3: gp31; SBG_2842; phage(gi41057383) | 3e-74 | Click |
46 | complement(3113153..3113416) | PHAGE_Erwini_ENT90: hypothetical protein; SBG_2843; phage(gi431810982) | 3e-34 | Click |
47 | 3113547..3114125 | PHAGE_Entero_PsP3: CI; SBG_2844; phage(gi41057393) | 1e-19 | Click |
48 | 3114125..3115162 | PHAGE_Entero_PsP3: gp27; SBG_2845; phage(gi41057380) | 2e-100 | Click |
49 | 3115234..3115263 | attR ACTCATAATCGCTTGGTCGCTGGTTCAAGT | N/A | Click |
50 | complement(3115400..3115735) | PHAGE_Bordet_1: Bbp28; SBG_2846; phage(gi41179389) | 3e-09 | Click |