| Definition | Pseudomonas putida S16 chromosome, complete genome. |
|---|---|
| Accession | NC_015733 |
| Length | 5,984,790 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 53 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1353421..1353432 | attL TTATTCATCAAA | N/A | Click |
| 2 | complement(1364473..1365411) | PHAGE_Pectob_ZF40: putative integrase; PPS_1220; phage(gi422936642) | 8e-28 | Click |
| 3 | complement(1365463..1365657) | hypothetical protein; PPS_1221 | N/A | Click |
| 4 | complement(1365696..1366055) | hypothetical protein; PPS_1222 | N/A | Click |
| 5 | complement(1366417..1366878) | hypothetical protein; PPS_1223 | N/A | Click |
| 6 | complement(1366809..1367321) | putative transcriptional regulator; PPS_1224 | N/A | Click |
| 7 | complement(1367318..1367695) | PHAGE_Entero_RTP: hypothetical protein rtp3; PPS_1225; phage(gi81343931) | 4e-13 | Click |
| 8 | complement(1367668..1367997) | PHAGE_Entero_mEp213: hypothetical protein; PPS_1226; phage(gi428782634) | 7e-19 | Click |
| 9 | complement(1368749..1369411) | hypothetical protein; PPS_1227 | N/A | Click |
| 10 | complement(1370158..1371027) | PHAGE_Riemer_RAP44: hypothetical protein; PPS_1228; phage(gi418489874) | 6e-17 | Click |
| 11 | complement(1371640..1372401) | hypothetical protein; PPS_1229 | N/A | Click |
| 12 | 1372514..1372894 | hypothetical protein; PPS_1230 | N/A | Click |
| 13 | complement(1372965..1373423) | hypothetical protein; PPS_1231 | N/A | Click |
| 14 | complement(1373420..1373677) | hypothetical protein; PPS_1232 | N/A | Click |
| 15 | complement(1373708..1374091) | PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; PPS_1233; phage(gi148912803) | 3e-18 | Click |
| 16 | complement(1374483..1374923) | PHAGE_Pseudo_AF: putative tellurite resistance protein; PPS_1234; phage(gi431810338) | 2e-17 | Click |
| 17 | complement(1375660..1375872) | PHAGE_Salmon_vB_SemP_Emek: C2 protein; PPS_1235; phage(gi399498836) | 1e-17 | Click |
| 18 | 1376834..1377646 | PHAGE_Pseudo_PAJU2: putative replication protein O; PPS_1236; phage(gi209552482) | 6e-31 | Click |
| 19 | 1377647..1377660 | attL ATCGGTGATCACCA | N/A | Click |
| 20 | 1377651..1378448 | PHAGE_Entero_mEpX1: putative replication protein DnaC; PPS_1237; phage(gi428781919) | 3e-35 | Click |
| 21 | 1378451..1378747 | PHAGE_Entero_ST64T: Orf-136; PPS_1238; phage(gi24371572) | 2e-33 | Click |
| 22 | 1378744..1379172 | PHAGE_Psychr_pOW20_A: hypothetical protein; PPS_1239; phage(gi472339811) | 5e-14 | Click |
| 23 | 1379187..1380467 | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; PPS_1240; phage(gi16130540) | 4e-16 | Click |
| 24 | 1380748..1381062 | hypothetical protein; PPS_1241 | N/A | Click |
| 25 | 1381114..1381746 | PHAGE_Pseudo_phi297: hypothetical protein; PPS_1242; phage(gi374531281) | 3e-32 | Click |
| 26 | 1381842..1381935 | tRNA | N/A | Click |
| 27 | 1382060..1382383 | PHAGE_Entero_SfV: holin; PPS_1243; phage(gi19549036) | 2e-09 | Click |
| 28 | 1382387..1382707 | PHAGE_Pseudo_PAJU2: putative endonuclease; PPS_1244; phage(gi209552497) | 6e-30 | Click |
| 29 | 1383001..1383309 | PHAGE_Entero_mEp235: terminase small subunit; PPS_1245; phage(gi428781811) | 3e-15 | Click |
| 30 | 1383440..1385077 | PHAGE_Tetras_SI1: terminase; PPS_1246; phage(gi472342258) | 2e-95 | Click |
| 31 | 1385074..1385262 | PHAGE_Burkho_phiE125: hypothetical protein phiE125p03; PPS_1247; phage(gi17975164) | 1e-11 | Click |
| 32 | 1385265..1386536 | PHAGE_Burkho_2: gp4, phage portal protein, HK97 family; PPS_1248; phage(gi134288632) | 4e-152 | Click |
| 33 | 1386533..1387504 | PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; PPS_1249; phage(gi17975166) | 2e-87 | Click |
| 34 | 1387584..1388879 | PHAGE_Burkho_phiE125: putative major capsid protein; PPS_1250; phage(gi17975167) | 1e-151 | Click |
| 35 | 1388932..1389180 | hypothetical protein; PPS_1251 | N/A | Click |
| 36 | 1389435..1389734 | PHAGE_Burkho_phiE125: hypothetical protein phiE125p08; PPS_1252; phage(gi17975169) | 2e-13 | Click |
| 37 | 1389737..1390111 | PHAGE_Entero_SfV: hypothetical protein SfVp07; PPS_1253; phage(gi19548997) | 5e-12 | Click |
| 38 | 1390134..1390607 | PHAGE_Entero_SfV: hypothetical protein SfVp08; PPS_1254; phage(gi19548998) | 1e-11 | Click |
| 39 | 1390638..1391231 | PHAGE_Entero_SfV: hypothetical protein SfVp09; PPS_1255; phage(gi19548999) | 1e-28 | Click |
| 40 | 1391237..1391440 | PHAGE_Entero_SfV: hypothetical protein SfVp10; PPS_1256; phage(gi19549000) | 3e-07 | Click |
| 41 | 1391440..1392927 | PHAGE_Entero_SfV: tail sheath protein; PPS_1257; phage(gi19549001) | 3e-136 | Click |
| 42 | 1392981..1393328 | PHAGE_Entero_SfV: hypothetical protein SfVp12; PPS_1258; phage(gi19549002) | 3e-18 | Click |
| 43 | 1393325..1393621 | PHAGE_Entero_SfV: hypothetical protein SfVp13; PPS_1259; phage(gi19549003) | 2e-15 | Click |
| 44 | 1393751..1395706 | PHAGE_Entero_SfV: tail protein; PPS_1260; phage(gi19549004) | 4e-53 | Click |
| 45 | 1395699..1396961 | PHAGE_Entero_SfV: tail/DNA circulation protein; PPS_1261; phage(gi19549005) | 7e-39 | Click |
| 46 | 1396965..1398074 | PHAGE_Entero_SfV: tail protein; PPS_1262; phage(gi19549006) | 1e-72 | Click |
| 47 | 1398083..1398583 | PHAGE_Entero_SfV: tail protein; PPS_1263; phage(gi19549007) | 3e-23 | Click |
| 48 | 1398580..1398966 | PHAGE_Entero_SfV: tail protein; PPS_1264; phage(gi19549008) | 9e-21 | Click |
| 49 | 1398968..1399999 | PHAGE_Entero_SfV: tail protein; PPS_1265; phage(gi19549009) | 1e-45 | Click |
| 50 | 1399990..1400634 | PHAGE_Entero_SfV: tail protein; PPS_1266; phage(gi19548988) | 9e-16 | Click |
| 51 | 1400637..1401404 | PHAGE_Bacill_SPO1: gp1.4; PPS_1267; phage(gi209972876) | 6e-07 | Click |
| 52 | 1401666..1403984 | PHAGE_Vibrio_VvAW1: hypothetical protein; PPS_1268; phage(gi460042928) | 1e-17 | Click |
| 53 | 1404037..1404765 | hypothetical protein; PPS_1269 | N/A | Click |
| 54 | complement(1404817..1406025) | hypothetical protein; PPS_1270 | N/A | Click |
| 55 | 1406192..1406692 | PHAGE_Pseudo_vB_PaeS_PMG1: lysozyme; PPS_1271; phage(gi374531676) | 2e-43 | Click |
| 56 | 1406689..1407054 | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp28; PPS_1272; phage(gi209552447) | 2e-22 | Click |
| 57 | 1413169..1413182 | attR ATCGGTGATCACCA | N/A | Click |
| 58 | 1413835..1413846 | attR TTATTCATCAAA | N/A | Click |
Region 2, total : 29 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1959736..1960110 | pyocin R2_PP, holin; PPS_1750 | N/A | Click |
| 2 | 1961003..1961584 | PHAGE_Stenot_S1: putative terminase small subunit; PPS_1751; phage(gi213163901) | 3e-06 | Click |
| 3 | 1962024..1963628 | PHAGE_Synech_S_CBS3: large terminase subunit; PPS_1752; phage(gi331028008) | 2e-82 | Click |
| 4 | 1963630..1963836 | PHAGE_Stenot_S1: putative peptidase b; PPS_1753; phage(gi213163904) | 1e-05 | Click |
| 5 | 1963848..1965314 | PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PPS_1754; phage(gi428782728) | 2e-89 | Click |
| 6 | 1965311..1966462 | PHAGE_Entero_mEp213: head maturation protease; PPS_1755; phage(gi428782594) | 4e-37 | Click |
| 7 | 1966459..1966806 | hypothetical protein; PPS_1756 | N/A | Click |
| 8 | 1966868..1967863 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PPS_1757; phage(gi428782731) | 1e-45 | Click |
| 9 | 1967866..1968180 | hypothetical protein; PPS_1758 | N/A | Click |
| 10 | 1968177..1968839 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PPS_1759; phage(gi428782733) | 1e-14 | Click |
| 11 | 1968832..1969362 | hypothetical protein; PPS_1760 | N/A | Click |
| 12 | 1969359..1969961 | PHAGE_Burkho_phi52237: phage baseplate assembly protein; PPS_1761; phage(gi72537705) | 1e-18 | Click |
| 13 | 1970004..1970273 | hypothetical protein; PPS_1762 | N/A | Click |
| 14 | 1970276..1970602 | PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PPS_1763; phage(gi428782737) | 2e-21 | Click |
| 15 | 1970599..1971579 | PHAGE_Salmon_RE_2010: baseplate assembly protein J; PPS_1764; phage(gi418489711) | 1e-49 | Click |
| 16 | 1971576..1972388 | PHAGE_Vibrio_vB_VpaM_MAR: tail protein; PPS_1765; phage(gi428782739) | 9e-22 | Click |
| 17 | 1972406..1973263 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PPS_1766; phage(gi428782740) | 6e-21 | Click |
| 18 | 1973270..1974010 | hypothetical protein; PPS_1767 | N/A | Click |
| 19 | 1974033..1974494 | PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; PPS_1768; phage(gi145708099) | 8e-24 | Click |
| 20 | 1974589..1975755 | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PPS_1769; phage(gi428782746) | 2e-83 | Click |
| 21 | 1975768..1976277 | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PPS_1770; phage(gi428782747) | 8e-36 | Click |
| 22 | 1976323..1976619 | hypothetical protein; PPS_1771 | N/A | Click |
| 23 | 1976752..1980240 | PHAGE_Vibrio_VP882: phage-related tail protein; PPS_1772; phage(gi126010872) | 6e-33 | Click |
| 24 | 1980250..1981095 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PPS_1773; phage(gi428782751) | 4e-19 | Click |
| 25 | 1981112..1981276 | pyocin R2_PP, tail component protein; PPS_1774 | N/A | Click |
| 26 | 1981335..1982378 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PPS_1775; phage(gi428782753) | 1e-50 | Click |
| 27 | 1982415..1982966 | PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PPS_1776; phage(gi414086784) | 2e-46 | Click |
| 28 | 1982963..1983523 | PHAGE_Burkho_Bcep22: Bcep22gp80; PPS_1777; phage(gi38640385) | 5e-08 | Click |
| 29 | 1983701..1984471 | PHAGE_Pseudo_B3: Dam modification methylase; PPS_1778; phage(gi56692617) | 3e-95 | Click |
Region 3, total : 34 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2762204..2763058) | PHAGE_Pseudo_phi297: putative phage repressor; PPS_2455; phage(gi374531272) | 1e-55 | Click |
| 2 | 2763146..2763322 | PHAGE_Salmon_vB_SemP_Emek: Cro; PPS_2456; phage(gi399498837) | 5e-06 | Click |
| 3 | 2763388..2763576 | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp61; PPS_2457; phage(gi209552480) | 5e-16 | Click |
| 4 | 2764017..2764898 | PHAGE_Pseudo_PAJU2: putative replication protein O; PPS_2458; phage(gi209552482) | 8e-33 | Click |
| 5 | 2764895..2766286 | PHAGE_Pseudo_F10: Putative DnaB-like replicative helicase; PPS_2459; phage(gi148912819) | 2e-76 | Click |
| 6 | 2766286..2766921 | hypothetical protein; PPS_2460 | N/A | Click |
| 7 | 2767679..2768260 | PHAGE_Pseudo_D3: Orf57; PPS_2461; phage(gi9635648) | 9e-09 | Click |
| 8 | 2768253..2768723 | hypothetical protein; PPS_2462 | N/A | Click |
| 9 | 2768753..2769034 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PPS_2463; phage(gi374531726) | 9e-05 | Click |
| 10 | 2769025..2769627 | PHAGE_Pseudo_PAJU2: putative NinG; PPS_2464; phage(gi209552490) | 3e-51 | Click |
| 11 | 2769651..2769770 | hypothetical protein; PPS_2465 | N/A | Click |
| 12 | 2769767..2770456 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PPS_2466; phage(gi374531730) | 1e-49 | Click |
| 13 | 2770944..2771204 | Lipid A 3-O-deacylase; PPS_2467 | N/A | Click |
| 14 | 2771379..2771690 | PHAGE_Burkho_BcepC6B: putative holin protein; PPS_2468; phage(gi48697210) | 7e-08 | Click |
| 15 | 2771690..2771959 | hypothetical protein; PPS_2469 | N/A | Click |
| 16 | complement(2771996..2772232) | hypothetical protein; PPS_2470 | N/A | Click |
| 17 | 2772292..2772507 | hypothetical protein; PPS_2471 | N/A | Click |
| 18 | 2772516..2773139 | PHAGE_Pectob_ZF40: putative transposase; PPS_2472; phage(gi422936679) | 6e-73 | Click |
| 19 | 2773171..2773647 | PHAGE_Pectob_ZF40: hypothetical protein; PPS_2473; phage(gi422936680) | 2e-44 | Click |
| 20 | 2773658..2774917 | PHAGE_Pseudo_H105/1: phage terminase large subunit; PPS_2474; phage(gi327198525) | 2e-105 | Click |
| 21 | 2774914..2776326 | PHAGE_Escher_HK639: hypothetical protein; PPS_2475; phage(gi356870603) | 5e-93 | Click |
| 22 | 2776326..2777402 | PHAGE_Pseudo_MP1412: head morphogenesis/minor structural protein; PPS_2476; phage(gi399529016) | 2e-42 | Click |
| 23 | 2777554..2778300 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2477; phage(gi423262006) | 2e-65 | Click |
| 24 | 2778310..2779278 | PHAGE_Pseudo_vB_Pae_Kakheti25: major capsid protein; PPS_2478; phage(gi388542670) | 8e-60 | Click |
| 25 | 2779321..2779617 | hypothetical protein; PPS_2479 | N/A | Click |
| 26 | 2779617..2779988 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2480; phage(gi423262009) | 5e-12 | Click |
| 27 | 2779990..2780373 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2481; phage(gi423262010) | 3e-18 | Click |
| 28 | 2780376..2780762 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2482; phage(gi423262012) | 8e-12 | Click |
| 29 | 2780759..2781166 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2483; phage(gi423262013) | 1e-16 | Click |
| 30 | 2781743..2782912 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PPS_2484; phage(gi423262017) | 1e-29 | Click |
| 31 | 2782970..2783455 | hypothetical protein; PPS_2485 | N/A | Click |
| 32 | 2783623..2783799 | hypothetical protein; PPS_2486 | N/A | Click |
| 33 | 2783990..2784184 | hypothetical protein; PPS_2487 | N/A | Click |
| 34 | 2784328..2787150 | PHAGE_Pseudo_MP29: putative tail component protein; PPS_2488; phage(gi215480016) | 3e-68 | Click |
Region 4, total : 19 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3708833..3708844 | attL CCCAGCACCGGC | N/A | Click |
| 2 | 3713051..3714073 | PHAGE_Acanth_mimivirus: DNA topoisomerase 1b; PPS_3313; phage(gi311977570) | 2e-39 | Click |
| 3 | 3714327..3714524 | PHAGE_Pseudo_phi297: global regulatory protein; PPS_3314; phage(gi374531265) | 5e-11 | Click |
| 4 | complement(3714570..3714923) | PHAGE_Ectoca_1: EsV-1-112; PPS_3315; phage(gi13242583) | 4e-05 | Click |
| 5 | complement(3714935..3716380) | non-specific serine/threonine protein kinase; PPS_3316 | N/A | Click |
| 6 | complement(3716387..3717514) | PHAGE_Ectoca_1: EsV-1-65; PPS_3317; phage(gi13242537) | 1e-06 | Click |
| 7 | complement(3717590..3717868) | hypothetical protein; PPS_3318 | N/A | Click |
| 8 | 3718068..3718149 | tRNA | N/A | Click |
| 9 | 3718225..3718671 | DoxX family protein; PPS_3319 | N/A | Click |
| 10 | complement(3718673..3718870) | PHAGE_Alcela_1: putative immediate early protein; PPS_3320; phage(gi10140993) | 6e-05 | Click |
| 11 | 3719330..3720340 | PHAGE_Megavi_lba: putative zinc-type alcohol dehydrogenase-like protein; PPS_3321; phage(gi448825331) | 9e-28 | Click |
| 12 | 3720506..3720742 | PHAGE_Entero_mEp237: hypothetical protein; PPS_3322; phage(gi435439326) | 4e-15 | Click |
| 13 | complement(3721060..3722274) | hypothetical protein; PPS_3323 | N/A | Click |
| 14 | 3722492..3723385 | PHAGE_Burkho_phi1026b: gp58; PPS_3324; phage(gi38707948) | 3e-23 | Click |
| 15 | 3723484..3724188 | PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; PPS_3325; phage(gi116326757) | 2e-12 | Click |
| 16 | complement(3724342..3724791) | alkylhydroperoxidase; PPS_3326 | N/A | Click |
| 17 | 3725214..3725624 | PHAGE_Hepati_virus: Polymerase; PPS_3327; phage(gi57021117) | 2e-05 | Click |
| 18 | 3726195..3726404 | PHAGE_Erwini_PEp14: hypothetical protein; PPS_3328; phage(gi374531889) | 7e-13 | Click |
| 19 | 3727371..3727616 | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp029; PPS_3329; phage(gi148912794) | 8e-09 | Click |
| 20 | 3727574..3727585 | attR CCCAGCACCGGC | N/A | Click |
| 21 | 3727618..3728670 | PHAGE_Pseudo_F10: Integrase; PPS_3330; phage(gi148912793) | 9e-100 | Click |
| 22 | complement(3728772..3728842) | tRNA | N/A | Click |
| 23 | complement(3728997..3730016) | PHAGE_Entero_WV8: putative head maturation protease; PPS_3331; phage(gi238801794) | 2e-12 | Click |