Definition Cupriavidus necator N-1 chromosome chromosome 1, complete sequence.
Accession NC_015726
Length 3,872,936
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1206426..1207016  PHAGE_Synech_S_CBS1: hypothetical protein; CNE_1c11850; phage(gi356870837)  3e-13  Click
2 1207124..1207642  PHAGE_Entero_mEp237: terminase small subunit nu1; CNE_1c11860; phage(gi435439266)  2e-05  Click
3 1207599..1209647  PHAGE_Entero_HK630: terminase large subunit A; CNE_1c11870; phage(gi428782789)  3e-123  Click
4 1209660..1209881  hypothetical protein; CNE_1c11880  N/A  Click
5 1209883..1211334  PHAGE_Stenot_S1: putative portal protein; CNE_1c11890; phage(gi213163905)  2e-85  Click
6 1211399..1213453  PHAGE_Stenot_S1: putative major head protein; CNE_1c11900; phage(gi213163906)  1e-80  Click
7 1213537..1213869  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; CNE_1c11910; phage(gi169257303)  1e-12  Click
8 1213869..1214171  hypothetical protein; CNE_1c11920  N/A  Click
9 1214168..1214743  hypothetical protein; CNE_1c11930  N/A  Click
10 1214764..1214952  PHAGE_Entero_Mu: hypothetical protein Mup38; CNE_1c11940; phage(gi9633529)  3e-05  Click
11 1214952..1216433  PHAGE_Entero_Mu: major tail subunit; CNE_1c11950; phage(gi9633530)  9e-107  Click
12 1216482..1216847  PHAGE_Entero_Mu: hypothetical protein Mup40; CNE_1c11960; phage(gi9633531)  1e-05  Click
13 1216847..1217176  hypothetical protein; CNE_1c11970  N/A  Click
14 1217256..1218977  PHAGE_Synech_S_CBS1: tail tape measure protein; CNE_1c11980; phage(gi356870809)  7e-16  Click
15 1219041..1220204  PHAGE_Entero_SfV: tail/DNA circulation protein; CNE_1c11990; phage(gi19549005)  4e-39  Click
16 1220201..1221400  PHAGE_Entero_Mu: putative tail protein; CNE_1c12000; phage(gi9633535)  3e-44  Click
17 1221400..1221963  PHAGE_Entero_Mu: putative baseplate assembly protein; CNE_1c12010; phage(gi9633536)  2e-22  Click
18 1221963..1222421  PHAGE_Entero_Mu: hypothetical protein Mup46; CNE_1c12020; phage(gi9633537)  1e-27  Click
19 1222423..1223475  PHAGE_Entero_Mu: hypothetical protein Mup47; CNE_1c12030; phage(gi9633538)  5e-50  Click
20 1223466..1224131  PHAGE_Entero_Mu: hypothetical protein Mup48; CNE_1c12040; phage(gi9633539)  4e-07  Click
21 1224156..1225352  PHAGE_Rhodob_RcapMu: putative tail fiber protein; CNE_1c12050; phage(gi356870896)  3e-34  Click
22 1225412..1226386  PHAGE_Salmon_ST64B: tail protein; CNE_1c12060; phage(gi23505468)  9e-14  Click
23 1226716..1227501  hypothetical protein; CNE_1c12070  N/A  Click
24 1227589..1228230  PHAGE_Cronob_ENT47670: putative endolysin; CNE_1c12080; phage(gi431810515)  2e-59  Click
25 1228253..1228549  PHAGE_Burkho_KS9: holin gp22; CNE_1c12090; phage(gi255033753)  5e-21  Click
26 1228533..1229072  PHAGE_Burkho_Bcep176: gp56; CNE_1c12100; phage(gi77864681)  9e-26  Click
27 complement(1229092..1229472)  hypothetical protein; CNE_1c12110  N/A  Click
28 complement(1229477..1229725)  hypothetical protein; CNE_1c12120  N/A  Click
29 complement(1229780..1230412)  PHAGE_Burkho_BcepIL02: putative DNA ligase; CNE_1c12130; phage(gi238801659)  2e-19  Click
Region 2, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1361982..1362392  PHAGE_Bacill_SPBc2: histone-like prokaryotic DNA-binding protein family; CNE_1c13360; phage(gi9630187)  2e-14  Click
2 1362509..1362934  MerR family transcriptional regulator; CNE_1c13370  N/A  Click
3 1362990..1363066  tRNA  N/A  Click
4 1363017..1363053  attL    CCTGCATGGGGTGCAGGTGGTCGGAGGTTCAAATCCT  N/A  Click
5 1363195..1364499  hypothetical protein; CNE_1c13390  N/A  Click
6 complement(1364501..1365619)  PHAGE_Burkho_phiE125: putative site-specific integrase; CNE_1c13400; phage(gi17975195)  6e-83  Click
7 complement(1365616..1365912)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p35; CNE_1c13410; phage(gi17975196)  2e-12  Click
8 complement(1365909..1366433)  PHAGE_Caulob_CcrRogue: DUF1643 protein; CNE_1c13420; phage(gi414089014)  1e-20  Click
9 complement(1366444..1366920)  hypothetical protein; CNE_1c13430  N/A  Click
10 complement(1366884..1367516)  PHAGE_Pseudo_F116: hypothetical protein F116p07; CNE_1c13440; phage(gi56692934)  9e-39  Click
11 1367552..1367800  hypothetical protein; CNE_1c13450  N/A  Click
12 complement(1367803..1368867)  PHAGE_Burkho_phiE125: putative DNA cytosine methylase; CNE_1c13460; phage(gi17975218)  4e-116  Click
13 complement(1368861..1369559)  hypothetical protein; CNE_1c13470  N/A  Click
14 complement(1369556..1371346)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp44; CNE_1c13480; phage(gi17313261)  0.0  Click
15 1381357..1381393  attR    CCTGCATGGGGTGCAGGTGGTCGGAGGTTCAAATCCT  N/A  Click