| Definition | Hyphomicrobium sp. MC1, complete genome. |
|---|---|
| Accession | NC_015717 |
| Length | 4,757,528 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 15 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1904610..1904623 | attL TGGCGGAGGGGGTG | N/A | Click |
| 2 | complement(1912673..1913455) | PHAGE_Stx2_c_1717: phage head maturation protease; HYPMC_2016; phage(gi209447181) | 2e-24 | Click |
| 3 | complement(1913455..1913658) | hypothetical protein; HYPMC_2017 | N/A | Click |
| 4 | complement(1914251..1914502) | hypothetical protein; HYPMC_2018 | N/A | Click |
| 5 | complement(1914502..1914738) | hypothetical protein; HYPMC_2019 | N/A | Click |
| 6 | 1914505..1914780 | hypothetical protein; HYPMC_2020 | N/A | Click |
| 7 | complement(1914741..1914890) | hypothetical protein; HYPMC_2021 | N/A | Click |
| 8 | complement(1914901..1915317) | PHAGE_Burkho_DC1: single stranded DNA binding protein; HYPMC_2022; phage(gi401723026) | 3e-07 | Click |
| 9 | complement(1915460..1917931) | PHAGE_Bacill_phi105: hypothetical protein phi105_42; HYPMC_2023; phage(gi22855035) | 8e-16 | Click |
| 10 | complement(1918082..1918327) | PHAGE_Burkho_KL3: gp52; HYPMC_2024; phage(gi327198097) | 8e-09 | Click |
| 11 | complement(1918506..1918976) | hypothetical protein; HYPMC_2025 | N/A | Click |
| 12 | complement(1918976..1920175) | PROPHAGE_Mesorh_MAFF303099: phage integrase; HYPMC_2026; phage(gi13473443) | 8e-76 | Click |
| 13 | complement(1920361..1920450) | tRNA | N/A | Click |
| 14 | 1920361..1920374 | attR TGGCGGAGGGGGTG | N/A | Click |
| 15 | 1920681..1921895 | PHAGE_Synech_S_CRM01: RlpA-like lipoprotein precursor; HYPMC_2027; phage(gi333798269) | 1e-20 | Click |
| 16 | 1922017..1923195 | PHAGE_Stx2_c_1717: penicillin-binding protein 6b; HYPMC_2028; phage(gi209447203) | 5e-48 | Click |
| 17 | 1923226..1923855 | PHAGE_Pseudo_EL: putative thymidylate kinase; HYPMC_2029; phage(gi82701134) | 1e-27 | Click |
| 18 | 1923855..1924976 | PHAGE_Strept_Dp_1: DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit; HYPMC_2030; phage(gi327198331) | 3e-09 | Click |
| 19 | 1925026..1926576 | PHAGE_Megavi_chiliensis: methionyl-tRNA synthetase; HYPMC_2031; phage(gi363540510) | 1e-28 | Click |
Region 2, total : 28 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2034806..2034820 | attL CTGGCGGGCCCACCA | N/A | Click |
| 2 | complement(2034912..2035952) | PHAGE_Rhodob_RcapNL: phage integrase/recombinase; HYPMC_2153; phage(gi461474991) | 5e-27 | Click |
| 3 | complement(2035927..2036187) | hypothetical protein; HYPMC_2154 | N/A | Click |
| 4 | complement(2036129..2036548) | hypothetical protein; HYPMC_2155 | N/A | Click |
| 5 | complement(2036538..2036843) | hypothetical protein; HYPMC_2156 | N/A | Click |
| 6 | complement(2036843..2037058) | hypothetical protein; HYPMC_2157 | N/A | Click |
| 7 | 2037164..2037505 | hypothetical protein; HYPMC_2158 | N/A | Click |
| 8 | 2037679..2038458 | hypothetical protein; HYPMC_2159 | N/A | Click |
| 9 | complement(2038793..2039002) | hypothetical protein; HYPMC_2160 | N/A | Click |
| 10 | 2039209..2040444 | PHAGE_Entero_phiP27: putative portal protein; HYPMC_2161; phage(gi18249902) | 7e-38 | Click |
| 11 | 2040386..2040775 | hypothetical protein; HYPMC_2162 | N/A | Click |
| 12 | 2040765..2041397 | PHAGE_Entero_phiP27: putative prohead protease; HYPMC_2163; phage(gi18249903) | 1e-23 | Click |
| 13 | 2041402..2042622 | PHAGE_Entero_phiP27: putative major capsid protein; HYPMC_2164; phage(gi18249904) | 7e-49 | Click |
| 14 | 2042640..2043026 | hypothetical protein; HYPMC_2165 | N/A | Click |
| 15 | 2043051..2043809 | PHAGE_Rhodoc_REQ2: main tail protein; HYPMC_2166; phage(gi372449833) | 2e-10 | Click |
| 16 | 2043819..2044397 | hypothetical protein; HYPMC_2167 | N/A | Click |
| 17 | 2044394..2044762 | hypothetical protein; HYPMC_2168 | N/A | Click |
| 18 | 2044665..2045015 | hypothetical protein; HYPMC_2169 | N/A | Click |
| 19 | 2045006..2045350 | PHAGE_Pseudo_PAJU2: putative endonuclease; HYPMC_2170; phage(gi209552497) | 3e-18 | Click |
| 20 | 2045343..2045705 | hypothetical protein; HYPMC_2171 | N/A | Click |
| 21 | 2045698..2046222 | hypothetical protein; HYPMC_2172 | N/A | Click |
| 22 | 2046219..2046536 | PHAGE_Geobac_E2: putative DNA packaging protein; HYPMC_2173; phage(gi148747734) | 7e-05 | Click |
| 23 | 2046536..2046937 | PHAGE_Rhizob_3: p011; HYPMC_2174; phage(gi195546542) | 7e-18 | Click |
| 24 | 2046930..2047343 | hypothetical protein; HYPMC_2175 | N/A | Click |
| 25 | 2047340..2047660 | putative Phage head-tail adaptor; HYPMC_2176 | N/A | Click |
| 26 | 2047657..2049303 | PHAGE_Rhizob_3: terminase large subunit; HYPMC_2177; phage(gi195546532) | 1e-50 | Click |
| 27 | 2049314..2052931 | PHAGE_Burkho_KL1: tail tape measure; HYPMC_2178; phage(gi399528734) | 1e-39 | Click |
| 28 | 2052997..2053386 | hypothetical protein; HYPMC_2179 | N/A | Click |
| 29 | complement(2053380..2054117) | PHAGE_Lymant_MNPV: Ld-bro-m; HYPMC_2180; phage(gi9631117) | 7e-05 | Click |
| 30 | 2054909..2054923 | attR CTGGCGGGCCCACCA | N/A | Click |
Region 3, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2249587..2250258) | PHAGE_Feldma_virus: putative sensor histidine kinase; HYPMC_2371; phage(gi197322366) | 3e-05 | Click |
| 2 | complement(2250340..2250630) | hypothetical protein; HYPMC_2372 | N/A | Click |
| 3 | complement(2250721..2252028) | PHAGE_Salmon_ViI: Gp5-tail associated lysozyme; HYPMC_2373; phage(gi326804576) | 6e-28 | Click |
| 4 | complement(2252182..2256132) | PHAGE_Roseob_1: gene transfer agent; HYPMC_2374; phage(gi331028138) | 0.0 | Click |
| 5 | complement(2256205..2256642) | PHAGE_Roseob_1: phage cell wall peptidase; HYPMC_2375; phage(gi331028137) | 2e-32 | Click |
| 6 | complement(2256726..2257586) | PHAGE_Roseob_1: gene transfer agent; HYPMC_2376; phage(gi331028136) | 7e-73 | Click |
| 7 | complement(2257583..2258221) | PHAGE_Roseob_1: putative glycoside hydrolase; HYPMC_2377; phage(gi331028135) | 9e-47 | Click |
| 8 | complement(2258249..2258839) | PHAGE_Shigel_EP23: phage tail length tape-measure protein 1; HYPMC_2378; phage(gi371496286) | 1e-12 | Click |
| 9 | complement(2258826..2259014) | hypothetical protein; HYPMC_2379 | N/A | Click |
| 10 | complement(2259014..2259391) | hypothetical protein; HYPMC_2380 | N/A | Click |
| 11 | complement(2259483..2259899) | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; HYPMC_2381; phage(gi461474972) | 3e-23 | Click |
| 12 | complement(2260024..2260431) | PHAGE_Strept_phiSASD1: gp33; HYPMC_2382; phage(gi298103498) | 4e-14 | Click |
| 13 | complement(2260431..2260625) | hypothetical protein; HYPMC_2383 | N/A | Click |
| 14 | complement(2260598..2260930) | PHAGE_Marino_P12026: phage head-tail adaptor; HYPMC_2384; phage(gi399528325) | 1e-06 | Click |
| 15 | complement(2260927..2261502) | PHAGE_Rhodob_RcapNL: hypothetical protein; HYPMC_2385; phage(gi461474967) | 1e-17 | Click |
| 16 | complement(2261992..2263233) | PHAGE_Entero_phiP27: putative major capsid protein; HYPMC_2386; phage(gi18249904) | 6e-80 | Click |
| 17 | complement(2263436..2264140) | PHAGE_Entero_phiP27: putative prohead protease; HYPMC_2387; phage(gi18249903) | 3e-32 | Click |