| Definition | Lactobacillus reuteri SD2112 chromosome, complete genome. |
|---|---|
| Accession | NC_015697 |
| Length | 2,264,399 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 7 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 407819..408277 | PHAGE_Bacill_36: flavodoxin; HMPREF0538_20395; phage(gi156564204) | 2e-10 | Click |
| 2 | 408270..408707 | PHAGE_Entero_SfV: putative flippase; HMPREF0538_20396; phage(gi19549013) | 2e-05 | Click |
| 3 | complement(408927..410087) | PHAGE_Lactob_LP65: transposase; HMPREF0538_20397; phage(gi56693108) | 2e-166 | Click |
| 4 | complement(410084..410629) | PHAGE_Helico_phiHP33: transposase; HMPREF0538_20398; phage(gi371671361) | 4e-16 | Click |
| 5 | 410616..411074 | hypothetical protein; HMPREF0538_20399 | N/A | Click |
| 6 | complement(411127..412248) | PHAGE_Megavi_chiliensis: UDP-N-acetylglucosamine 2-epimerase; HMPREF0538_20400; phage(gi363540634) | 1e-21 | Click |
| 7 | complement(412328..412400) | tRNA | N/A | Click |
| 8 | complement(412460..413761) | PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; HMPREF0538_20401; phage(gi310831360) | 5e-40 | Click |
Region 2, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 424254..424265 | attL CTTTAATTAAAA | N/A | Click |
| 2 | 435766..436803 | PHAGE_Azospi_Cd: Phage major capsid protein; HMPREF0538_20427; phage(gi168495136) | 3e-35 | Click |
| 3 | 436820..437098 | hypothetical protein; HMPREF0538_20428 | N/A | Click |
| 4 | 437099..437473 | PHAGE_Geobac_E2: putative head-tail adaptor; HMPREF0538_20429; phage(gi148747735) | 6e-07 | Click |
| 5 | 437629..437874 | PHAGE_Bacill_Fah: holin; HMPREF0538_20430; phage(gi89152494) | 9e-14 | Click |
| 6 | 437888..438208 | hypothetical protein; HMPREF0538_20431 | N/A | Click |
| 7 | 438238..438708 | PHAGE_Bacill_Fah: site-specific serine recombinase; HMPREF0538_20432; phage(gi89152504) | 1e-12 | Click |
| 8 | 439330..439638 | hypothetical protein; HMPREF0538_20433 | N/A | Click |
| 9 | 439878..440465 | PHAGE_Bacill_Fah: site-specific serine recombinase; HMPREF0538_20434; phage(gi89152504) | 3e-13 | Click |
| 10 | 440545..440928 | phage integrase family site-specific recombinase; HMPREF0538_20435 | N/A | Click |
| 11 | 443526..443537 | attR CTTTAATTAAAA | N/A | Click |
Region 3, total : 46 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 452535..452546 | attL TAGTGGCTTTTT | N/A | Click |
| 2 | 455239..455254 | attL TGGTCAATTACACATT | N/A | Click |
| 3 | 462928..463611 | PROPHAGE_Escher_CFT073: transposase; HMPREF0538_20462; phage(gi26248360) | 7e-09 | Click |
| 4 | 463616..464374 | PROPHAGE_Escher_CFT073: transposase/IS protein; HMPREF0538_20463; phage(gi26248359) | 3e-39 | Click |
| 5 | complement(464301..464597) | hypothetical protein; HMPREF0538_20464 | N/A | Click |
| 6 | complement(464600..465334) | PHAGE_Aeromo_Aeh1: hypothetical protein Aeh1p090; HMPREF0538_20465; phage(gi38640013) | 2e-05 | Click |
| 7 | complement(465378..465590) | hypothetical protein; HMPREF0538_20466 | N/A | Click |
| 8 | complement(465619..468228) | PHAGE_Sulfol_virus: putative helicase; HMPREF0538_20467; phage(gi16753094) | 4e-09 | Click |
| 9 | complement(468234..469532) | hypothetical protein; HMPREF0538_20468 | N/A | Click |
| 10 | 469910..470368 | hypothetical protein; HMPREF0538_20469 | N/A | Click |
| 11 | 470451..470654 | hypothetical protein; HMPREF0538_20470 | N/A | Click |
| 12 | 470638..470955 | hypothetical protein; HMPREF0538_20471 | N/A | Click |
| 13 | 470952..472091 | PHAGE_Entero_phiFL4A: hypothetical protein; HMPREF0538_20472; phage(gi281416449) | 1e-70 | Click |
| 14 | 472069..472644 | PHAGE_Staphy_SMSAP5: hypothetical protein; HMPREF0538_20473; phage(gi422935814) | 3e-49 | Click |
| 15 | 472700..474634 | PHAGE_Strept_P9: polymerase; HMPREF0538_20474; phage(gi157311150) | 0.0 | Click |
| 16 | 474701..475105 | hypothetical protein; HMPREF0538_20475 | N/A | Click |
| 17 | 475108..477363 | PHAGE_Lactob_A2: putative primase; HMPREF0538_20476; phage(gi22296557) | 7e-50 | Click |
| 18 | 477411..477857 | PHAGE_Bacter_2: hypothetical protein APSE235; HMPREF0538_20477; phage(gi212499740) | 2e-14 | Click |
| 19 | 477838..479193 | PHAGE_Entero_phiFL4A: DNA helicase; HMPREF0538_20478; phage(gi281416462) | 6e-134 | Click |
| 20 | 479190..479657 | restriction endonuclease; HMPREF0538_20479 | N/A | Click |
| 21 | 479806..480183 | PHAGE_Burkho_phiE125: putative class I holin; HMPREF0538_20480; phage(gi17975232) | 4e-16 | Click |
| 22 | 480303..480845 | hypothetical protein; HMPREF0538_20481 | N/A | Click |
| 23 | 480845..482071 | PHAGE_Lactob_Lj771: putative adenine methyltransferase; HMPREF0538_20482; phage(gi163932178) | 3e-64 | Click |
| 24 | 482144..482764 | hypothetical protein; HMPREF0538_20483 | N/A | Click |
| 25 | 482767..482973 | hypothetical protein; HMPREF0538_20484 | N/A | Click |
| 26 | 483104..484072 | PHAGE_Spirop_R8A2B: putative transposase; HMPREF0538_20485; phage(gi9626114) | 3e-18 | Click |
| 27 | 484096..485715 | PHAGE_Nocard_NBR1: terminase large subunit; HMPREF0538_20486; phage(gi372217589) | 1e-89 | Click |
| 28 | 485744..487009 | PHAGE_Klebsi_phiKO2: putative portal protein; HMPREF0538_20487; phage(gi46402090) | 1e-71 | Click |
| 29 | 487006..487677 | PHAGE_Geobac_E2: putative Clp peptidase; HMPREF0538_20488; phage(gi148747731) | 3e-35 | Click |
| 30 | 487696..488874 | PHAGE_Azospi_Cd: Phage major capsid protein; HMPREF0538_20489; phage(gi168495136) | 3e-37 | Click |
| 31 | 488891..489169 | hypothetical protein; HMPREF0538_20490 | N/A | Click |
| 32 | 489169..489552 | PHAGE_Entero_mEp235: hypothetical protein; HMPREF0538_20491; phage(gi428781819) | 4e-09 | Click |
| 33 | 489539..489952 | PHAGE_Bacill_IEBH: holin; HMPREF0538_20492; phage(gi197261577) | 4e-25 | Click |
| 34 | 489949..490098 | hypothetical protein; HMPREF0538_20493 | N/A | Click |
| 35 | 490120..490239 | hypothetical protein; HMPREF0538_20494 | N/A | Click |
| 36 | 490306..490827 | PHAGE_Strept_SMP: putative lysin; HMPREF0538_20495; phage(gi119953752) | 3e-09 | Click |
| 37 | 491094..491327 | hypothetical protein; HMPREF0538_20496 | N/A | Click |
| 38 | 491363..493024 | PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0538_20497; phage(gi77020163) | 2e-35 | Click |
| 39 | 493017..494594 | PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0538_20498; phage(gi77020163) | 4e-25 | Click |
| 40 | 494764..495615 | PHAGE_Amsact_: putative ATP-binding cassette transporter; HMPREF0538_20499; phage(gi9964444) | 1e-22 | Click |
| 41 | 495578..496468 | ABC transporter; HMPREF0538_20500 | N/A | Click |
| 42 | 496471..496923 | LytR/AlgR transcriptional regulator; HMPREF0538_20501 | N/A | Click |
| 43 | 496925..497311 | hypothetical protein; HMPREF0538_20502 | N/A | Click |
| 44 | complement(497439..497561) | hypothetical protein; HMPREF0538_20503 | N/A | Click |
| 45 | 497731..497746 | attR TGGTCAATTACACATT | N/A | Click |
| 46 | complement(497928..498164) | hypothetical protein; HMPREF0538_20504 | N/A | Click |
| 47 | complement(498189..501305) | PHAGE_Lactoc_P087: putative helicase; HMPREF0538_20505; phage(gi229604971) | 9e-06 | Click |
| 48 | complement(501360..502517) | PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; HMPREF0538_20506; phage(gi310831004) | 1e-11 | Click |
| 49 | complement(502514..503482) | PHAGE_Thermu_45: XerD-like integrase; HMPREF0538_20507; phage(gi157265299) | 4e-14 | Click |
| 50 | 510746..510757 | attR TAGTGGCTTTTT | N/A | Click |
Region 4, total : 28 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 513061..513636 | PHAGE_Staphy_SMSAP5: hypothetical protein; HMPREF0538_20518; phage(gi422935814) | 9e-48 | Click |
| 2 | 513692..515626 | PHAGE_Strept_6: putative DNA polymerase A domain; HMPREF0538_20519; phage(gi28876473) | 5e-174 | Click |
| 3 | 515713..516099 | hypothetical protein; HMPREF0538_20520 | N/A | Click |
| 4 | 516102..518357 | PHAGE_Lactob_A2: putative primase; HMPREF0538_20521; phage(gi22296557) | 2e-50 | Click |
| 5 | 518405..518851 | PHAGE_Strept_6: hypothetical protein SpyM3_1441; HMPREF0538_20522; phage(gi28876471) | 2e-13 | Click |
| 6 | 518832..520187 | PHAGE_Strept_6: putative helicase; HMPREF0538_20523; phage(gi28876470) | 1e-128 | Click |
| 7 | 520184..520651 | restriction endonuclease; HMPREF0538_20524 | N/A | Click |
| 8 | 520799..521176 | PHAGE_Burkho_phiE125: putative class I holin; HMPREF0538_20525; phage(gi17975232) | 3e-16 | Click |
| 9 | 521299..521841 | hypothetical protein; HMPREF0538_20526 | N/A | Click |
| 10 | 521841..523070 | PHAGE_Strept_1: transferase; HMPREF0538_20527; phage(gi39653711) | 2e-67 | Click |
| 11 | 523144..523776 | hypothetical protein; HMPREF0538_20528 | N/A | Click |
| 12 | 523769..523975 | hypothetical protein; HMPREF0538_20529 | N/A | Click |
| 13 | 524041..525642 | PHAGE_Nocard_NBR1: terminase large subunit; HMPREF0538_20530; phage(gi372217589) | 4e-87 | Click |
| 14 | 525670..525831 | hypothetical protein; HMPREF0538_20531 | N/A | Click |
| 15 | complement(525972..526133) | lipoprotein YddW; HMPREF0538_20532 | N/A | Click |
| 16 | 526190..527446 | PHAGE_Yersin_PY54: portal protein; HMPREF0538_20533; phage(gi33770511) | 2e-68 | Click |
| 17 | 527443..528105 | PHAGE_Geobac_E2: putative Clp peptidase; HMPREF0538_20534; phage(gi148747731) | 7e-37 | Click |
| 18 | 528126..529304 | PHAGE_Salmon_ST64B: Major capsid protein precursor; HMPREF0538_20535; phage(gi23505451) | 2e-35 | Click |
| 19 | 529317..529595 | PHAGE_Geobac_E2: putative DNA packaging protein; HMPREF0538_20536; phage(gi148747734) | 9e-05 | Click |
| 20 | 529596..529976 | PHAGE_Geobac_E2: putative head-tail adaptor; HMPREF0538_20537; phage(gi148747735) | 4e-08 | Click |
| 21 | 529966..530388 | PHAGE_Bacill_IEBH: holin; HMPREF0538_20538; phage(gi197261577) | 8e-27 | Click |
| 22 | 530486..530674 | hypothetical protein; HMPREF0538_20539 | N/A | Click |
| 23 | 530736..532289 | PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0538_20540; phage(gi77020163) | 3e-33 | Click |
| 24 | 532276..532680 | phage integrase family site-specific recombinase; HMPREF0538_20541 | N/A | Click |
| 25 | 532667..534253 | PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0538_20542; phage(gi77020163) | 3e-27 | Click |
| 26 | complement(534307..534570) | cytosine/purine/uracil/thiamine/allantoin permease; HMPREF0538_20543 | N/A | Click |
| 27 | complement(534572..534796) | hypothetical protein; HMPREF0538_20544 | N/A | Click |
| 28 | complement(534886..536322) | PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; HMPREF0538_20545; phage(gi441432344) | 2e-25 | Click |
Region 5, total : 64 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2088913..2088924 | attL AAAAATAAAAAG | N/A | Click |
| 2 | 2089700..2089948 | PROPHAGE_Neisse_MC58: IS30 family transposase; HMPREF0538_22050; phage(gi15677611) | 5e-07 | Click |
| 3 | complement(2090123..2090506) | alkaline shock protein 23; HMPREF0538_22051 | N/A | Click |
| 4 | complement(2090524..2090715) | hypothetical protein; HMPREF0538_22052 | N/A | Click |
| 5 | complement(2090731..2091276) | hypothetical protein; HMPREF0538_22053 | N/A | Click |
| 6 | complement(2091458..2092987) | gluconokinase; HMPREF0538_22054 | N/A | Click |
| 7 | complement(2093038..2094057) | PurR family transcriptional regulator; HMPREF0538_22055 | N/A | Click |
| 8 | complement(2094140..2095276) | GntP family gluconate:proton (H+) symporter; HMPREF0538_22056 | N/A | Click |
| 9 | complement(2095381..2096646) | PHAGE_Lister_A118: putative integrase; HMPREF0538_22057; phage(gi16798814) | 1e-44 | Click |
| 10 | complement(2096918..2097685) | PHAGE_Lactob_Lj965: hypothetical protein Ljo_0291; HMPREF0538_22058; phage(gi41179221) | 1e-21 | Click |
| 11 | complement(2097721..2098149) | hypothetical protein; HMPREF0538_22059 | N/A | Click |
| 12 | complement(2098207..2098728) | PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0538_22060; phage(gi399528925) | 2e-08 | Click |
| 13 | complement(2098777..2099205) | PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; HMPREF0538_22061; phage(gi418489418) | 6e-14 | Click |
| 14 | complement(2099202..2099510) | PHAGE_Lactob_LF1: xre family toxin-antitoxin system; HMPREF0538_22062; phage(gi418489419) | 1e-13 | Click |
| 15 | 2099733..2099939 | hypothetical protein; HMPREF0538_22063 | N/A | Click |
| 16 | 2099951..2100718 | PHAGE_Lactob_1: antirepressor; HMPREF0538_22064; phage(gi219563224) | 5e-81 | Click |
| 17 | 2100730..2100858 | hypothetical protein; HMPREF0538_22065 | N/A | Click |
| 18 | 2100858..2100980 | hypothetical protein; HMPREF0538_22066 | N/A | Click |
| 19 | 2100995..2101201 | DNA-binding protein; HMPREF0538_22067 | N/A | Click |
| 20 | 2101198..2101377 | hypothetical protein; HMPREF0538_22068 | N/A | Click |
| 21 | 2101413..2101643 | hypothetical protein; HMPREF0538_22069 | N/A | Click |
| 22 | 2101636..2101908 | 6-phospho-beta-glucosidase; HMPREF0538_22070 | N/A | Click |
| 23 | 2101912..2102664 | PHAGE_Mycoba_Porky: gp68; HMPREF0538_22071; phage(gi194303364) | 2e-08 | Click |
| 24 | 2102667..2103347 | PHAGE_Staphy_phiMR25: hypothetical protein; HMPREF0538_22072; phage(gi189427139) | 6e-28 | Click |
| 25 | 2103337..2103765 | PHAGE_Staphy_phi5967PVL: ssDNA-binding protein; HMPREF0538_22073; phage(gi431810257) | 5e-29 | Click |
| 26 | 2103778..2104608 | PHAGE_Lactob_LF1: DNA replication protein; HMPREF0538_22074; phage(gi418489431) | 3e-23 | Click |
| 27 | 2104624..2105421 | PHAGE_Lactob_LF1: DNA replication protein; HMPREF0538_22075; phage(gi418489432) | 4e-42 | Click |
| 28 | 2105424..2105576 | chaperone DnaJ; HMPREF0538_22076 | N/A | Click |
| 29 | 2105580..2105840 | hypothetical protein; HMPREF0538_22077 | N/A | Click |
| 30 | 2105830..2106351 | hypothetical protein; HMPREF0538_22078 | N/A | Click |
| 31 | 2106364..2106921 | PHAGE_Lactoc_bIL286: Orf19; HMPREF0538_22079; phage(gi13095762) | 5e-08 | Click |
| 32 | 2106998..2107447 | hypothetical protein; HMPREF0538_22080 | N/A | Click |
| 33 | 2107440..2107718 | hypothetical protein; HMPREF0538_22081 | N/A | Click |
| 34 | 2107715..2108086 | oxygen-independent coproporphyrinogen III oxidase; HMPREF0538_22082 | N/A | Click |
| 35 | complement(2108101..2109231) | PHAGE_Staphy_phiPV83: transposase; HMPREF0538_22083; phage(gi9635740) | 3e-24 | Click |
| 36 | 2109293..2109490 | XRE family transcriptional regulator; HMPREF0538_22084 | N/A | Click |
| 37 | 2109480..2109722 | hypothetical protein; HMPREF0538_22085 | N/A | Click |
| 38 | 2109691..2110077 | hypothetical protein; HMPREF0538_22086 | N/A | Click |
| 39 | 2110190..2110384 | hypothetical protein; HMPREF0538_22087 | N/A | Click |
| 40 | 2110488..2110631 | hypothetical protein; HMPREF0538_22088 | N/A | Click |
| 41 | 2110663..2110854 | hypothetical protein; HMPREF0538_22089 | N/A | Click |
| 42 | 2110964..2111479 | PHAGE_Lactob_LF1: phage transcriptional regulator; HMPREF0538_22090; phage(gi418489438) | 6e-13 | Click |
| 43 | 2112045..2112124 | tRNA | N/A | Click |
| 44 | 2112304..2112783 | PHAGE_Lactoc_bIL311: Orf21; HMPREF0538_22091; phage(gi13095679) | 9e-29 | Click |
| 45 | 2112773..2113207 | hypothetical protein; HMPREF0538_22092 | N/A | Click |
| 46 | 2113753..2113932 | PHAGE_Lactob_JCL1032: hypothetical protein; HMPREF0538_22093; phage(gi418489174) | 3e-11 | Click |
| 47 | 2113925..2114203 | hypothetical protein; HMPREF0538_22094 | N/A | Click |
| 48 | 2114447..2114617 | PHAGE_Lactob_JCL1032: hypothetical protein; HMPREF0538_22095; phage(gi418489174) | 1e-09 | Click |
| 49 | complement(2114643..2114882) | hypothetical protein; HMPREF0538_22096 | N/A | Click |
| 50 | 2114838..2115695 | PHAGE_Lactob_LF1: HNH endonuclease domain protein; HMPREF0538_22097; phage(gi418489440) | 2e-114 | Click |
| 51 | 2115879..2116346 | PHAGE_Lactob_LF1: phage terminase small subunit; HMPREF0538_22098; phage(gi418489384) | 2e-50 | Click |
| 52 | 2116343..2118052 | PHAGE_Lactob_LF1: bacteriophage terminase large subunit; HMPREF0538_22099; phage(gi418489385) | 0.0 | Click |
| 53 | 2118033..2118395 | hypothetical protein; HMPREF0538_22100 | N/A | Click |
| 54 | 2118558..2119817 | PHAGE_Lactob_LF1: bacteriophage portal protein; HMPREF0538_22101; phage(gi418489387) | 7e-179 | Click |
| 55 | 2119756..2120409 | PHAGE_Lactob_LF1: phage head maturation protease; HMPREF0538_22102; phage(gi418489388) | 2e-61 | Click |
| 56 | 2120410..2121546 | PHAGE_Lactob_LF1: phage capsid protein; HMPREF0538_22103; phage(gi418489389) | 3e-161 | Click |
| 57 | 2121688..2122101 | PHAGE_Lactob_LF1: DNA packaging protein; HMPREF0538_22104; phage(gi418489390) | 3e-32 | Click |
| 58 | 2122004..2122357 | PHAGE_Lactob_LF1: head-tail joining protein; HMPREF0538_22105; phage(gi418489391) | 1e-38 | Click |
| 59 | 2122341..2122715 | PHAGE_Lactob_LF1: head-tail joining protein; HMPREF0538_22106; phage(gi418489392) | 2e-40 | Click |
| 60 | 2122712..2123131 | PHAGE_Lactob_LF1: head-tail joining protein; HMPREF0538_22107; phage(gi418489393) | 9e-42 | Click |
| 61 | 2123131..2123760 | PHAGE_Lactob_LF1: major tail protein; HMPREF0538_22108; phage(gi418489394) | 5e-77 | Click |
| 62 | 2123813..2124154 | PHAGE_Lactob_LF1: hypothetical protein; HMPREF0538_22109; phage(gi418489395) | 2e-18 | Click |
| 63 | 2124163..2124333 | PHAGE_Lactob_LF1: hypothetical protein; HMPREF0538_22110; phage(gi418489396) | 2e-14 | Click |
| 64 | 2124350..2128852 | PHAGE_Lactob_LF1: phage tail tape measure protein; HMPREF0538_22111; phage(gi418489397) | 0.0 | Click |
| 65 | 2128856..2129698 | PHAGE_Lactob_LF1: hypothetical protein; HMPREF0538_22112; phage(gi418489398) | 4e-92 | Click |
| 66 | 2129773..2132241 | PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; HMPREF0538_22113; phage(gi418489399) | 4e-168 | Click |
| 67 | 2140292..2140303 | attR AAAAATAAAAAG | N/A | Click |