Definition Delftia sp. Cs1-4 chromosome, complete genome.
Accession NC_015563
Length 6,685,842
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 42 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3010917..3010934  attL    GTGCTGGCCGAGGCCCGC  N/A  Click
2 3023429..3024712  PHAGE_Burkho_KS9: integrase gp31; DelCs14_2650; phage(gi255033714)  1e-79  Click
3 complement(3024709..3025020)  PHAGE_Burkho_KS9: transcriptional regulator gp34; DelCs14_2651; phage(gi255033717)  6e-12  Click
4 complement(3025017..3025154)  hypothetical protein; DelCs14_2652  N/A  Click
5 3025341..3026276  PHAGE_Salmon_7_11: hypothetical protein; DelCs14_2653; phage(gi345461254)  4e-06  Click
6 complement(3026296..3027690)  PHAGE_Mycoba_Porky: gp98; DelCs14_2654; phage(gi194303394)  5e-91  Click
7 complement(3027836..3028237)  BLUF domain-containing protein; DelCs14_2655  N/A  Click
8 complement(3028479..3028772)  histone family protein nucleoid-structuring protein H-NS; DelCs14_2656  N/A  Click
9 complement(3028826..3029524)  hypothetical protein; DelCs14_2657  N/A  Click
10 complement(3029514..3029744)  hypothetical protein; DelCs14_2658  N/A  Click
11 complement(3029741..3030802)  PHAGE_Entero_epsilon15: RecT; DelCs14_2659; phage(gi30387413)  3e-62  Click
12 complement(3030799..3031608)  PHAGE_Xantho_CP2: hypothetical protein; DelCs14_2660; phage(gi448245207)  4e-13  Click
13 complement(3031688..3031870)  hypothetical protein; DelCs14_2661  N/A  Click
14 complement(3031858..3032121)  hypothetical protein; DelCs14_2662  N/A  Click
15 complement(3032125..3032391)  hypothetical protein; DelCs14_2663  N/A  Click
16 complement(3032381..3032722)  hypothetical protein; DelCs14_2664  N/A  Click
17 complement(3032953..3033249)  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; DelCs14_2665; phage(gi109289967)  2e-07  Click
18 complement(3033521..3033739)  hypothetical protein; DelCs14_2666  N/A  Click
19 complement(3034077..3034460)  hypothetical protein; DelCs14_2667  N/A  Click
20 complement(3034479..3035135)  PHAGE_Entero_HK446: prophage repressor; DelCs14_2668; phage(gi428782233)  8e-31  Click
21 complement(3035574..3035786)  hypothetical protein; DelCs14_2669  N/A  Click
22 3035981..3036508  hypothetical protein; DelCs14_2670  N/A  Click
23 3036501..3036653  hypothetical protein; DelCs14_2671  N/A  Click
24 3036650..3036967  hypothetical protein; DelCs14_2672  N/A  Click
25 3036960..3037856  PHAGE_Acinet_Bphi_B1251: hypothetical protein; DelCs14_2673; phage(gi423261989)  9e-18  Click
26 3037853..3039247  PHAGE_Burkho_KS9: helicase gp45; DelCs14_2674; phage(gi255033728)  3e-58  Click
27 3039259..3039723  PHAGE_Pseudo_phi297: holliday junction resolvase; DelCs14_2675; phage(gi374531280)  2e-41  Click
28 3039720..3040178  PHAGE_Aggreg_S1249: putative recombination protein NinB; DelCs14_2676; phage(gi273809585)  4e-06  Click
29 3040175..3040630  hypothetical protein; DelCs14_2677  N/A  Click
30 3040702..3041223  PHAGE_Pseudo_F116: hypothetical protein F116p37; DelCs14_2678; phage(gi56692953)  5e-12  Click
31 complement(3041282..3042118)  PHAGE_Entero_mEp390: hypothetical protein; DelCs14_2679; phage(gi428782711)  1e-47  Click
32 3042231..3042932  PHAGE_Escher_HK639: terminase small subunit; DelCs14_2680; phage(gi356870601)  1e-40  Click
33 3042929..3044233  PHAGE_Bdello_phi1422: putative TerL large-subunit terminase; DelCs14_2681; phage(gi422936857)  7e-58  Click
34 3044235..3046442  PHAGE_Escher_vB_EcoP_G7C: portal protein; DelCs14_2682; phage(gi345461893)  1e-08  Click
35 3046493..3046711  hypothetical protein; DelCs14_2683  N/A  Click
36 3046743..3047702  PHAGE_Bovine_1: large tegument protein; DelCs14_2684; phage(gi124246481)  1e-08  Click
37 3047721..3048761  PHAGE_Pseudo_pYD6_A: major coat protein; DelCs14_2685; phage(gi472340770)  5e-16  Click
38 3048856..3049311  hypothetical protein; DelCs14_2686  N/A  Click
39 3049291..3049308  attR    GTGCTGGCCGAGGCCCGC  N/A  Click
40 3049331..3050008  PHAGE_Pseudo_F116: hypothetical protein F116p46; DelCs14_2687; phage(gi56692957)  3e-13  Click
41 complement(3050080..3050355)  hypothetical protein; DelCs14_2688  N/A  Click
42 3051023..3052360  PHAGE_Pseudo_F116: hypothetical protein F116p58; DelCs14_2689; phage(gi56692969)  1e-08  Click
43 complement(3052366..3052659)  hypothetical protein; DelCs14_2690  N/A  Click
44 complement(3052712..3053326)  phage membrane protein; DelCs14_2691  N/A  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4414854..4418348  PHAGE_Acanth_moumouvirus: DEAD/SNF2-like helicase; DelCs14_3899; phage(gi441432286)  5e-05  Click
2 4418366..4419031  hypothetical protein; DelCs14_3900  N/A  Click
3 4419111..4419824  phosphoserine phosphatase SerB; DelCs14_3901  N/A  Click
4 complement(4419933..4420547)  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp14; DelCs14_3902; phage(gi209901327)  7e-36  Click
5 complement(4420624..4421259)  hypothetical protein; DelCs14_3903  N/A  Click
6 complement(4421334..4422698)  PHAGE_Vibrio_Vf33: Vpf380; DelCs14_3904; phage(gi49248527)  2e-48  Click
7 complement(4422695..4423084)  PHAGE_Vibrio_Vf33: Vpf104; DelCs14_3905; phage(gi49248526)  3e-10  Click
8 complement(4423086..4424456)  PHAGE_Human__2: EBNA-1; DelCs14_3906; phage(gi139424506)  6e-25  Click
9 complement(4424706..4424939)  PHAGE_Vibrio_Vf33: Vpf77; DelCs14_3907; phage(gi49248524)  1e-06  Click
10 complement(4425013..4425228)  hypothetical protein; DelCs14_3908  N/A  Click
11 complement(4425228..4425368)  hypothetical protein; DelCs14_3909  N/A  Click
12 complement(4425580..4425990)  PHAGE_Ralsto_PE226: hypothetical protein; DelCs14_3910; phage(gi327198629)  2e-07  Click
13 complement(4425974..4427056)  PHAGE_Entero_2: gene II product; DelCs14_3911; phage(gi9625383)  8e-24  Click
14 complement(4427173..4427409)  hypothetical protein; DelCs14_3912  N/A  Click
15 complement(4427502..4427753)  hypothetical protein; DelCs14_3913  N/A  Click
16 4428483..4429061  PHAGE_Macaci_1: large tegument protein; DelCs14_3914; phage(gi30984464)  2e-16  Click
Region 3, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4568202..4570685)  PHAGE_Burkho_BcepIL02: DarB-like antirestriction protein; DelCs14_4045; phage(gi238801686)  3e-11  Click
2 complement(4570814..4571854)  hypothetical protein; DelCs14_4046  N/A  Click
3 complement(4571845..4572582)  PHAGE_Burkho_BcepIL02: PAPS reductase-like protein; DelCs14_4047; phage(gi238801683)  2e-39  Click
4 complement(4572582..4573451)  PHAGE_Burkho_BcepIL02: virion-associated phage protein; DelCs14_4048; phage(gi238801682)  2e-20  Click
5 complement(4573429..4573869)  hypothetical protein; DelCs14_4049  N/A  Click
6 complement(4573869..4574189)  PHAGE_Synech_S_SKS1: hypothetical protein; DelCs14_4050; phage(gi472340851)  1e-05  Click
7 complement(4574285..4576213)  PHAGE_Escher_HK639: host specificity protein; DelCs14_4051; phage(gi356870623)  4e-06  Click
8 complement(4576210..4578789)  PHAGE_Burkho_BcepIL02: virion-associated phage protein; DelCs14_4052; phage(gi238801679)  5e-44  Click
9 complement(4578820..4579284)  hypothetical protein; DelCs14_4053  N/A  Click
10 complement(4579281..4581119)  PHAGE_Burkho_BcepIL02: putative tail fiber protein; DelCs14_4054; phage(gi238801677)  2e-08  Click
11 complement(4581122..4582168)  PHAGE_Burkho_BcepIL02: virion-associated phage protein; DelCs14_4055; phage(gi238801673)  2e-08  Click
12 complement(4582172..4582588)  PHAGE_Burkho_BcepIL02: virion-associated phage protein; DelCs14_4056; phage(gi238801671)  4e-08  Click
13 complement(4582658..4583290)  PHAGE_Burkho_BcepIL02: virion-associated phage protein; DelCs14_4057; phage(gi238801669)  6e-25  Click
14 complement(4583281..4583877)  hypothetical protein; DelCs14_4058  N/A  Click
15 complement(4583906..4584289)  hypothetical protein; DelCs14_4059  N/A  Click
16 complement(4584377..4584826)  hypothetical protein; DelCs14_4060  N/A  Click
17 complement(4584853..4585968)  PHAGE_Burkho_BcepIL02: major capsid protein; DelCs14_4061; phage(gi238801666)  6e-86  Click
18 complement(4586029..4586235)  PHAGE_Pseudo_F116: hypothetical protein F116p47; DelCs14_4062; phage(gi56692958)  9e-05  Click
19 complement(4586244..4587173)  PHAGE_Burkho_BcepIL02: hypothetical protein BcepIL02_gp47; DelCs14_4063; phage(gi238801663)  2e-16  Click
20 complement(4587717..4588364)  PHAGE_Salmon_SE1: Gp19; DelCs14_4064; phage(gi219681236)  1e-11  Click
21 complement(4588435..4588758)  hypothetical protein; DelCs14_4065  N/A  Click
22 complement(4588748..4591087)  PHAGE_Burkho_BcepIL02: phage portal protein; DelCs14_4066; phage(gi238801662)  1e-140  Click
23 complement(4591074..4591496)  PHAGE_Burkho_BcepIL02: hypothetical protein BcepIL02_gp45; DelCs14_4067; phage(gi238801661)  2e-05  Click
24 complement(4591526..4592881)  PHAGE_Bdello_phi1422: putative TerL large-subunit terminase; DelCs14_4068; phage(gi422936857)  2e-53  Click
25 complement(4592878..4593654)  PHAGE_Burkho_BcepIL02: TerS; DelCs14_4069; phage(gi238801644)  3e-31  Click
26 complement(4593668..4594033)  hypothetical protein; DelCs14_4070  N/A  Click
27 complement(4594313..4594840)  hypothetical protein; DelCs14_4071  N/A  Click
28 complement(4594843..4595814)  PHAGE_Pseudo_phi297: putative DNA replication protein O; DelCs14_4072; phage(gi374531278)  3e-33  Click
29 4596143..4596862  PHAGE_Cronob_ENT47670: putative transcriptional regulator; DelCs14_4073; phage(gi431810510)  6e-13  Click
Region 4, total : 47 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4943027..4943041  attL    CGCAGCTGCCGCCAG  N/A  Click
2 complement(4943687..4944784)  PHAGE_Burkho_phiE202: gp5, phage portal protein, pbsx family; DelCs14_4366; phage(gi134288763)  1e-110  Click
3 complement(4944781..4946748)  PHAGE_Burkho_phiE202: gp4, phage terminase, ATPase subunit; DelCs14_4367; phage(gi134288784)  0.0  Click
4 4946852..4947637  PHAGE_Burkho_phiE202: gp3, phage capsid scaffolding protein (GPO); DelCs14_4368; phage(gi134288755)  2e-44  Click
5 4947677..4948699  PHAGE_Burkho_phiE202: gp2, phage major capsid protein, P2 family; DelCs14_4369; phage(gi134288740)  3e-107  Click
6 4948754..4949458  PHAGE_Burkho_phiE202: gp1, phage terminase, endonuclease subunit; DelCs14_4370; phage(gi134288748)  4e-39  Click
7 4949575..4950054  PHAGE_Burkho_phiE202: gp48, phage head completion protein (GPL); DelCs14_4371; phage(gi134288751)  4e-23  Click
8 4950056..4950286  PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; DelCs14_4372; phage(gi134288782)  3e-07  Click
9 4950302..4950541  PHAGE_Burkho_phiE125: putative class II holin; DelCs14_4373; phage(gi17975185)  2e-06  Click
10 4950538..4951068  PHAGE_Iodoba_phiPLPE: gp15 putative lysozyme; DelCs14_4374; phage(gi197085629)  9e-20  Click
11 4951065..4951646  PHAGE_Burkho_Bcep176: gp56; DelCs14_4375; phage(gi77864681)  1e-12  Click
12 4951630..4952145  PHAGE_Pseudo_phiCTX: predicted tail completion; DelCs14_4376; phage(gi17313232)  5e-27  Click
13 4952148..4952621  PROPHAGE_Salmon_Ty2: putative phage tail protein; DelCs14_4377; phage(gi29143749)  2e-29  Click
14 4952691..4953245  PHAGE_Pseudo_phiCTX: predicted baseplate; DelCs14_4378; phage(gi17313235)  9e-16  Click
15 4953242..4953604  PHAGE_Burkho_phiE202: gp35, phage baseplate assembly protein; DelCs14_4379; phage(gi134288768)  3e-19  Click
16 4953601..4954440  PHAGE_Mannhe_phiMHaA1: baseplate assembly protein J; DelCs14_4380; phage(gi109289956)  6e-31  Click
17 4954440..4955387  hypothetical protein; DelCs14_4381  N/A  Click
18 4955391..4955879  hypothetical protein; DelCs14_4382  N/A  Click
19 4955887..4958040  PHAGE_Entero_phiEF24C: putative adsorption associated tail protein; DelCs14_4383; phage(gi158079337)  1e-39  Click
20 4958030..4959064  PHAGE_Bacill_phiAGATE: hypothetical protein; DelCs14_4384; phage(gi448261019)  1e-05  Click
21 4959073..4959777  hypothetical protein; DelCs14_4385  N/A  Click
22 4959843..4960697  PHAGE_Human__2: EBNA-1; DelCs14_4386; phage(gi139424506)  2e-31  Click
23 4960699..4961124  hypothetical protein; DelCs14_4387  N/A  Click
24 4961295..4962491  PHAGE_Erwini_ENT90: tail sheath protein; DelCs14_4388; phage(gi431810939)  1e-125  Click
25 4962507..4963016  PHAGE_Ralsto_phiRSA1: putative tail tube protein gpFII; DelCs14_4389; phage(gi145708102)  5e-35  Click
26 4963102..4963452  PHAGE_Entero_PsP3: gp23; DelCs14_4390; phage(gi41057375)  1e-16  Click
27 4963461..4963592  PHAGE_Yersin_413C: gpE+E'; DelCs14_4391; phage(gi30065728)  6e-07  Click
28 4963608..4966271  PHAGE_Burkho_phiE202: gp26, bacteriophage membrane protein; DelCs14_4392; phage(gi134288775)  1e-145  Click
29 4966283..4966741  PHAGE_Burkho_phiE202: gp25, fels-2 prophage protein; DelCs14_4393; phage(gi134288777)  2e-33  Click
30 4966751..4967803  PHAGE_Burkho_phiE202: gp24, fels-2 prophage protein; DelCs14_4394; phage(gi134288767)  8e-82  Click
31 4968310..4968966  PHAGE_Entero_P4: hypothetical protein P4p03; DelCs14_4395; phage(gi9627510)  3e-25  Click
32 complement(4968970..4970052)  PHAGE_Entero_P4: hypothetical protein P4p02; DelCs14_4396; phage(gi9627509)  4e-77  Click
33 complement(4970058..4970429)  hypothetical protein; DelCs14_4397  N/A  Click
34 complement(4970477..4971433)  hypothetical protein; DelCs14_4398  N/A  Click
35 complement(4971466..4972185)  PHAGE_Burkho_phiE202: gp21; DelCs14_4399; phage(gi134288765)  2e-17  Click
36 complement(4972554..4972766)  hypothetical protein; DelCs14_4400  N/A  Click
37 4972803..4973009  hypothetical protein; DelCs14_4401  N/A  Click
38 4973120..4973422  PHAGE_Burkho_KS5: gp9; DelCs14_4402; phage(gi327198007)  7e-24  Click
39 4973437..4973847  PHAGE_Burkho_phiE202: gp19, conserved hypothetical protein; DelCs14_4403; phage(gi134288771)  4e-18  Click
40 4973950..4974093  hypothetical protein; DelCs14_4404  N/A  Click
41 4974101..4974610  hypothetical protein; DelCs14_4405  N/A  Click
42 4974617..4976659  PHAGE_Burkho_2: gp15, hypothetical replication protein; DelCs14_4406; phage(gi134288692)  2e-68  Click
43 4976675..4976905  hypothetical protein; DelCs14_4407  N/A  Click
44 4976933..4977139  hypothetical protein; DelCs14_4408  N/A  Click
45 4977143..4977379  hypothetical protein; DelCs14_4409  N/A  Click
46 4977376..4977693  PHAGE_Burkho_KS9: transcriptional regulator gp34; DelCs14_4410; phage(gi255033717)  1e-05  Click
47 4977593..4977607  attR    CGCAGCTGCCGCCAG  N/A  Click
48 complement(4977650..4978939)  PHAGE_Burkho_KS9: integrase gp31; DelCs14_4411; phage(gi255033714)  3e-114  Click
49 4979117..4981768  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; DelCs14_4412; phage(gi310831476)  2e-32  Click