Definition Streptococcus suis ST3 chromosome, complete genome.
Accession NC_015433
Length 2,028,815
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 32 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(425699..426625)  PHAGE_Lactoc_P087: putative cysteine synthase; SSUST3_0430; phage(gi229605000)  5e-97  Click
2 426687..426704  attL    AAAAAAACTATCTCGCCG  N/A  Click
3 complement(426855..428012)  PHAGE_Strept_1: putative integrase; SSUST3_0431; phage(gi28876146)  3e-94  Click
4 complement(428209..428940)  PHAGE_Strept_phiNJ2: putative protease; SSUST3_0432; phage(gi414090257)  4e-38  Click
5 complement(428988..429371)  PHAGE_Temper_1: hypothetical protein phiNIH1.1_03; SSUST3_0433; phage(gi16271779)  1e-40  Click
6 complement(429378..429758)  PHAGE_Strept_TP_J34: putative CI repressor homolog; SSUST3_0434; phage(gi444475878)  3e-23  Click
7 429943..430143  PHAGE_Strept_3: putative Cro-like repressor protein; SSUST3_0435; phage(gi28876312)  7e-13  Click
8 430213..430539  hypothetical protein; SSUST3_0436  N/A  Click
9 430613..430867  PHAGE_Strept_phi3396: hypothetical protein phi3396_09; SSUST3_0437; phage(gi126011071)  1e-17  Click
10 430908..431156  hypothetical protein; SSUST3_0438  N/A  Click
11 431303..431644  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0439; phage(gi119953758)  8e-14  Click
12 431644..432123  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0440; phage(gi119953762)  3e-83  Click
13 432120..432365  hypothetical protein; SSUST3_0441  N/A  Click
14 432346..432810  PHAGE_Strept_PH15: hypothetical protein phiPH15_gp17; SSUST3_0442; phage(gi190151432)  2e-52  Click
15 432779..433951  PHAGE_Strept_SMP: putative helicase; SSUST3_0443; phage(gi119953764)  0.0  Click
16 433972..434292  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0444; phage(gi119953765)  3e-52  Click
17 434302..435000  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0445; phage(gi119953766)  3e-116  Click
18 435293..435691  PHAGE_Strept_SMP: single-strand binding protein; SSUST3_0446; phage(gi119953767)  2e-68  Click
19 435702..436529  PHAGE_Strept_SMP: replication protein; SSUST3_0447; phage(gi119953768)  9e-158  Click
20 436519..437892  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0448; phage(gi119953769)  0.0  Click
21 438270..438425  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0449; phage(gi119953772)  6e-23  Click
22 438422..438730  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0450; phage(gi119953773)  6e-18  Click
23 438732..438947  hypothetical protein; SSUST3_0451  N/A  Click
24 439136..439450  PHAGE_Bacill_WBeta: hypothetical protein wp43; SSUST3_0452; phage(gi85701422)  5e-05  Click
25 439523..439957  PHAGE_Strept_SMP: hypothetical protein; SSUST3_0453; phage(gi119953775)  2e-21  Click
26 440054..440401  PHAGE_Strept_3: hypothetical protein SpyM3_1123; SSUST3_0454; phage(gi28876293)  9e-43  Click
27 440603..440851  PHAGE_Strept_3: hypothetical protein SpyM3_1122; SSUST3_0455; phage(gi28876292)  9e-19  Click
28 440848..442113  PHAGE_Lactoc_phiLC3: putative portal protein; SSUST3_0456; phage(gi45597416)  9e-150  Click
29 442106..443326  PHAGE_Strept_SM1: gp35; SSUST3_0457; phage(gi32469466)  1e-85  Click
30 443555..443686  hypothetical protein; SSUST3_0458  N/A  Click
31 complement(444265..444408)  hypothetical protein; SSUST3_0459  N/A  Click
32 445241..445258  attR    AAAAAAACTATCTCGCCG  N/A  Click
33 complement(445269..445901)  hypothetical protein; SSUST3_0460  N/A  Click
34 445958..447250  PHAGE_Acidia_7: putative helicase; SSUST3_0461; phage(gi162329428)  2e-05  Click
Region 2, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1954050..1955393  PROPHAGE_Escher_CFT073: transposase; SSUST3_1952; phage(gi26248352)  4e-13  Click
2 complement(1955436..1955810)  hypothetical protein; SSUST3_1953  N/A  Click
3 complement(1955996..1956847)  putative amino acid ABC transporter substrate-binding protein; SSUST3_1954  N/A  Click
4 complement(1956880..1957566)  PHAGE_Salini_CW02: putative amidotransferase; SSUST3_1955; phage(gi423261911)  1e-07  Click
5 complement(1957680..1957853)  hypothetical protein; SSUST3_1956  N/A  Click
6 complement(1957887..1958009)  hypothetical protein; SSUST3_1957  N/A  Click
7 complement(1958106..1960646)  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; SSUST3_1958; phage(gi310831476)  4e-51  Click
8 complement(1960661..1961104)  arginine repressor; SSUST3_1959  N/A  Click
9 1961208..1962896  PHAGE_Acanth_mimivirus: arginyl-tRNA synthetase; SSUST3_1960; phage(gi311978065)  3e-57  Click
10 1963076..1963600  PHAGE_Strept_M102: hypothetical protein M102_gp12; SSUST3_1961; phage(gi242345583)  7e-09  Click
11 1963572..1964468  PHAGE_Cyprin_2: membrane protein ORF25D; SSUST3_1962; phage(gi422933804)  6e-32  Click
Region 3, total : 28 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1987098..1987110  attL    CCTTGATAGCCTC  N/A  Click
2 complement(1996136..1996690)  PHAGE_Entero_phiEF24C: peptidoglycan-binding LysM; SSUST3_1993; phage(gi158079306)  7e-34  Click
3 complement(1996822..1997616)  ABC-type cobalt transport system, permease CbiQ-like transporter; SSUST3_1994  N/A  Click
4 complement(1997609..1998451)  PHAGE_Plankt_PaV_LD: ABC transporter; SSUST3_1995; phage(gi371496158)  1e-18  Click
5 complement(1998427..1999263)  PHAGE_Plankt_PaV_LD: ABC transporter; SSUST3_1996; phage(gi371496158)  3e-24  Click
6 complement(1999260..1999799)  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; SSUST3_1997  N/A  Click
7 complement(1999809..2000666)  PHAGE_Equid_8: envelope glycoprotein J; SSUST3_1998; phage(gi386522795)  7e-06  Click
8 complement(2000748..2002031)  PHAGE_Acanth_mimivirus: putative zinc protease; SSUST3_1999; phage(gi311977609)  2e-18  Click
9 complement(2002028..2003281)  PHAGE_Acanth_moumouvirus: putative Zn-dependent peptidase; SSUST3_2000; phage(gi441432193)  6e-05  Click
10 complement(2003624..2003782)  hypothetical protein; SSUST3_2001  N/A  Click
11 complement(2003812..2004012)  hypothetical protein; SSUST3_2002  N/A  Click
12 complement(2004065..2004613)  phage protein; SSUST3_2003  N/A  Click
13 complement(2004691..2005149)  hypothetical protein; SSUST3_2004  N/A  Click
14 complement(2005162..2005977)  PHAGE_Strept_phi3396: putative replication protein; SSUST3_2005; phage(gi126011075)  1e-73  Click
15 complement(2005964..2006248)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p19; SSUST3_2006; phage(gi13095880)  5e-06  Click
16 complement(2006238..2006576)  phage protein; SSUST3_2007  N/A  Click
17 complement(2006573..2006722)  hypothetical protein; SSUST3_2008  N/A  Click
18 complement(2006734..2006937)  hypothetical protein; SSUST3_2009  N/A  Click
19 complement(2006925..2007314)  hypothetical protein; SSUST3_2010  N/A  Click
20 complement(2007753..2008379)  PHAGE_Lactoc_bIL311: Orf3; SSUST3_2011; phage(gi13095661)  3e-25  Click
21 complement(2008392..2009138)  PHAGE_Lactob_Lj928: putative antirepressor; SSUST3_2012; phage(gi41179298)  1e-11  Click
22 complement(2009157..2009384)  PHAGE_Lactoc_T: Cro repressor; SSUST3_2013; phage(gi14251161)  2e-11  Click
23 2009538..2010251  PHAGE_Strept_1: cI repressor; SSUST3_2014; phage(gi39653678)  3e-17  Click
24 2010615..2011445  PHAGE_Staphy_EW: ORF014; SSUST3_2015; phage(gi66395821)  2e-92  Click
25 2011412..2011424  attR    CCTTGATAGCCTC  N/A  Click
26 2011610..2012782  PHAGE_Lactoc_bIL311: integrase; SSUST3_2016; phage(gi13095659)  1e-58  Click
27 2012920..2013303  S4 domain-containing protein YaaA; SSUST3_2017  N/A  Click
28 2013306..2014400  DNA replication and repair protein RecF; SSUST3_2018  N/A  Click
29 complement(2014535..2014684)  hypothetical protein; SSUST3_2019  N/A  Click
30 complement(2014840..2016183)  PROPHAGE_Escher_CFT073: transposase; SSUST3_2020; phage(gi26248352)  4e-13  Click